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Related papers: Boosting Low-Resource Biomedical QA via Entity-Awa…

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Biomedical question answering often requires decisions from retrieved literature whose relevance, quality, and support for candidate answers are uneven. Most retrieval-augmented large language model (LLM) methods feed this literature to the…

Computation and Language · Computer Science 2026-05-19 Chang Zong , Hao Ning , Siliang Tang , Jie Huang , Jian Wan

As part of the large number of scientific articles being published every year, the publication rate of biomedical literature has been increasing. Consequently, there has been considerable effort to harness and summarize the massive amount…

Computation and Language · Computer Science 2022-03-31 Amanuel Alambo , Tanvi Banerjee , Krishnaprasad Thirunarayan , Michael Raymer

Entity matching (EM) is a critical step in entity resolution (ER). Recently, entity matching based on large language models (LLMs) has shown great promise. However, current LLM-based entity matching approaches typically follow a binary…

Computation and Language · Computer Science 2024-12-13 Tianshu Wang , Xiaoyang Chen , Hongyu Lin , Xuanang Chen , Xianpei Han , Hao Wang , Zhenyu Zeng , Le Sun

Large Language Models (LLMs) have been widely applied in various professional fields. By fine-tuning the models using domain specific question and answer datasets, the professional domain knowledge and Q\&A abilities of these models have…

Computation and Language · Computer Science 2024-07-17 Qimin Yang , Rongsheng Wang , Jiexin Chen , Runqi Su , Tao Tan

The growth rate in the amount of biomedical documents is staggering. Unlocking information trapped in these documents can enable researchers and practitioners to operate confidently in the information world. Biomedical NER, the task of…

Computation and Language · Computer Science 2021-06-24 Xiang Dai

Most state-of-the-art models for named entity recognition (NER) rely on the availability of large amounts of labeled data, making them challenging to extend to new, lower-resourced languages. However, there are now several proposed…

Computation and Language · Computer Science 2019-08-27 Aditi Chaudhary , Jiateng Xie , Zaid Sheikh , Graham Neubig , Jaime G. Carbonell

Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of…

Computation and Language · Computer Science 2021-10-18 Maya Varma , Laurel Orr , Sen Wu , Megan Leszczynski , Xiao Ling , Christopher Ré

Discovering the intended items of user queries from a massive repository of items is one of the main goals of an e-commerce search system. Relevance prediction is essential to the search system since it helps improve performance. When…

Information Retrieval · Computer Science 2023-07-21 Jiong Cai , Yong Jiang , Yue Zhang , Chengyue Jiang , Ke Yu , Jianhui Ji , Rong Xiao , Haihong Tang , Tao Wang , Zhongqiang Huang , Pengjun Xie , Fei Huang , Kewei Tu

Large language models (LLMs) face significant challenges in specialized biomedical tasks due to the inherent complexity of medical reasoning and the sensitive nature of clinical data. Existing LLMs often struggle with intricate medical…

Computation and Language · Computer Science 2026-05-12 Zongxian Yang , Jiayu Qian , Kay Chen Tan , Hau-San Wong , Yulong Chen , Haoyu Zhang , Zhi-An Huang

Reinforcement learning has shown great promise in aligning language models with human preferences in a variety of text generation tasks, including machine translation. For translation tasks, rewards can easily be obtained from quality…

Computation and Language · Computer Science 2024-10-15 Gahyun Yoo , Jay Yoon Lee

The ever-growing volume of biomedical publications creates a critical need for efficient knowledge discovery. In this context, we introduce an open-source end-to-end framework designed to construct knowledge around specific diseases…

Computation and Language · Computer Science 2024-12-05 Christos Theodoropoulos , Andrei Catalin Coman , James Henderson , Marie-Francine Moens

How much knowledge do pretrained language models hold? Recent research observed that pretrained transformers are adept at modeling semantics but it is unclear to what degree they grasp human knowledge, or how to ensure they do so. In this…

Computation and Language · Computer Science 2021-02-05 Corby Rosset , Chenyan Xiong , Minh Phan , Xia Song , Paul Bennett , Saurabh Tiwary

Automatic Question Answering (QA) has been successfully applied in various domains such as search engines and chatbots. Biomedical QA (BQA), as an emerging QA task, enables innovative applications to effectively perceive, access and…

Computation and Language · Computer Science 2024-01-17 Qiao Jin , Zheng Yuan , Guangzhi Xiong , Qianlan Yu , Huaiyuan Ying , Chuanqi Tan , Mosha Chen , Songfang Huang , Xiaozhong Liu , Sheng Yu

Large Language Models (LLMs) have demonstrated impressive capabilities across natural language processing tasks. However, their application to specialized domains such as medicine and biology requires further optimization to ensure factual…

Computation and Language · Computer Science 2025-02-06 Seonok Kim

External knowledge,e.g., entities and entity descriptions, can help humans understand texts. Many works have been explored to include external knowledge in the pre-trained models. These methods, generally, design pre-training tasks and…

Computation and Language · Computer Science 2022-08-19 Qinghua Zhao , Shuai Ma , Yuxuan Lei

Training models on low-resource named entity recognition tasks has been shown to be a challenge, especially in industrial applications where deploying updated models is a continuous effort and crucial for business operations. In such cases…

Computation and Language · Computer Science 2019-10-18 Peter Izsak , Shira Guskin , Moshe Wasserblat

In this work we present Google's submission to the BioASQ 7 biomedical question answering (QA) task (specifically Task 7b, Phase B). The core of our systems are based on BERT QA models, specifically the model of \cite{alberti2019bert}. In…

Computation and Language · Computer Science 2019-09-25 Stefan Hosein , Daniel Andor , Ryan McDonald

Multimodal Large Language Models (MLLMs) have shown remarkable performance in high-resource languages. However, their effectiveness diminishes significantly in the contexts of low-resource languages. Current multilingual enhancement methods…

Computer Vision and Pattern Recognition · Computer Science 2025-12-10 Yufei Gao , Jiaying Fei , Nuo Chen , Ruirui Chen , Guohang Yan , Yunshi Lan , Botian Shi

Biomedical summarization requires large datasets to train for text generation. We show that while transfer learning offers a viable option for addressing this challenge, an in-domain pre-training does not always offer advantages in a BioASQ…

Computation and Language · Computer Science 2023-07-11 Dima Galat , Marian-Andrei Rizoiu

Non-extractive commonsense QA remains a challenging AI task, as it requires systems to reason about, synthesize, and gather disparate pieces of information, in order to generate responses to queries. Recent approaches on such tasks show…

Computation and Language · Computer Science 2019-11-01 Kaixin Ma , Jonathan Francis , Quanyang Lu , Eric Nyberg , Alessandro Oltramari