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Accurate 3D+t whole-heart mesh reconstruction from cine MRI is a clinically crucial yet technically challenging task. The difficulty of this task arises from two coupled factors: inherently sparse sampling of 3D cardiac anatomy by 2D image…

Computer Vision and Pattern Recognition · Computer Science 2026-05-15 Xiaoyue Liu , Xiaohan Yuan , Mark Y Chan , Ching-Hui Sia , Lei Li

Shape reconstruction from imaging volumes is a recurring need in medical image analysis. Common workflows start with a segmentation step, followed by careful post-processing and,finally, ad hoc meshing algorithms. As this sequence can be…

Computer Vision and Pattern Recognition · Computer Science 2025-07-11 Antonio Pepe , Richard Schussnig , Jianning Li , Christina Gsaxner , Dieter Schmalstieg , Jan Egger

We propose Deep-Motion-Net: an end-to-end graph neural network (GNN) architecture that enables 3D (volumetric) organ shape reconstruction from a single in-treatment kV planar X-ray image acquired at any arbitrary projection angle.…

Computer Vision and Pattern Recognition · Computer Science 2024-07-10 Isuru Wijesinghe , Michael Nix , Arezoo Zakeri , Alireza Hokmabadi , Bashar Al-Qaisieh , Ali Gooya , Zeike A. Taylor

We present a novel multimodal deep learning framework for cardiac resynchronisation therapy (CRT) response prediction from 2D echocardiography and cardiac magnetic resonance (CMR) data. The proposed method first uses the `nnU-Net'…

Image and Video Processing · Electrical Eng. & Systems 2021-07-23 Esther Puyol-Antón , Baldeep S. Sidhu , Justin Gould , Bradley Porter , Mark K. Elliott , Vishal Mehta , Christopher A. Rinaldi , Andrew P. King

Accurate segmentation of the heart is an important step towards evaluating cardiac function. In this paper, we present a fully automated framework for segmentation of the left (LV) and right (RV) ventricular cavities and the myocardium…

Computer Vision and Pattern Recognition · Computer Science 2017-10-11 Christian F. Baumgartner , Lisa M. Koch , Marc Pollefeys , Ender Konukoglu

3D printing has been widely adopted for clinical decision making and interventional planning of Congenital heart disease (CHD), while whole heart and great vessel segmentation is the most significant but time-consuming step in the model…

Image and Video Processing · Electrical Eng. & Systems 2019-07-15 Xiaowei Xu , Tianchen Wang , Dewen Zeng , Yiyu Shi , Qianjun Jia , Haiyun Yuan , Meiping Huang , Jian Zhuang

We recently published a deep learning study on the potential of encoder-decoder networks for the segmentation of the 2D CAMUS ultrasound dataset. We propose in this abstract an extension of the evaluation criteria to anatomical assessment,…

Joint 2D cardiac segmentation and 3D volume reconstruction are fundamental to building statistical cardiac anatomy models and understanding functional mechanisms from motion patterns. However, due to the low through-plane resolution of cine…

Computer Vision and Pattern Recognition · Computer Science 2022-06-16 Qi Chang , Zhennan Yan , Mu Zhou , Di Liu , Khalid Sawalha , Meng Ye , Qilong Zhangli , Mikael Kanski , Subhi Al Aref , Leon Axel , Dimitris Metaxas

Dynamic free-breathing fetal cardiac MRI is one of the most challenging modalities, which requires high temporal and spatial resolution to depict rapid changes in a small fetal heart. The ability of deep learning methods to recover…

Image and Video Processing · Electrical Eng. & Systems 2023-08-16 Denis Prokopenko , Kerstin Hammernik , Thomas Roberts , David F A Lloyd , Daniel Rueckert , Joseph V Hajnal

Statistical shape modeling is the computational process of discovering significant shape parameters from segmented anatomies captured by medical images (such as MRI and CT scans), which can fully describe subject-specific anatomy in the…

Computer Vision and Pattern Recognition · Computer Science 2023-08-01 Krithika Iyer , Shireen Elhabian

Background: Three-dimensional, whole heart, balanced steady state free precession (WH-bSSFP) sequences provide delineation of intra-cardiac and vascular anatomy. However, they have long acquisition times. Here, we propose significant speed…

Image and Video Processing · Electrical Eng. & Systems 2019-12-24 Jennifer A. Steeden , Michael Quail , Alexander Gotschy , Andreas Hauptmann , Simon Arridge , Rodney Jones , Vivek Muthurangu

It is challenging to directly estimate the human geometry from a single image due to the high diversity and complexity of body shapes with the various clothing styles. Most of model-based approaches are limited to predict the shape and pose…

Computer Vision and Pattern Recognition · Computer Science 2022-02-02 Lixiang Lin , Jianke Zhu

Purpose: To develop a deep learning method on a nonlinear manifold to explore the temporal redundancy of dynamic signals to reconstruct cardiac MRI data from highly undersampled measurements. Methods: Cardiac MR image reconstruction is…

Image and Video Processing · Electrical Eng. & Systems 2021-04-05 Ziwen Ke , Zhuo-Xu Cui , Wenqi Huang , Jing Cheng , Sen Jia , Haifeng Wang , Xin Liu , Hairong Zheng , Leslie Ying , Yanjie Zhu , Dong Liang

Accurate cardiac motion estimation from cine cardiac magnetic resonance (CMR) images is vital for assessing cardiac function and detecting its abnormalities. Existing methods often struggle to capture heart motion accurately because they…

Computer Vision and Pattern Recognition · Computer Science 2025-08-29 Reza Akbari Movahed , Abuzar Rezaee , Arezoo Zakeri , Colin Berry , Edmond S. L. Ho , Ali Gooya

X-ray computed microtomography ({\mu}-CT) is a non-destructive technique that can generate high-resolution 3D images of the internal anatomy of medical and biological samples. These images enable clinicians to examine internal anatomy and…

Computational models of cardiac structure and function are increasingly central to the development of subject-specific cardiac digital twins, enabling improved characterization of contractile dysfunction, pathological remodeling, and…

This paper addresses the challenges of designing mesh convolution neural networks for 3D mesh dense prediction. While deep learning has achieved remarkable success in image dense prediction tasks, directly applying or extending these…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Shi Hezi , Jiang Luo , Zheng Jianmin , Zeng Jun

We propose a method based on deep learning to perform cardiac segmentation on short axis MRI image stacks iteratively from the top slice (around the base) to the bottom slice (around the apex). At each iteration, a novel variant of U-net is…

Computer Vision and Pattern Recognition · Computer Science 2018-04-26 Qiao Zheng , Hervé Delingette , Nicolas Duchateau , Nicholas Ayache

Cardiac segmentation of atriums, ventricles, and myocardium in computed tomography (CT) images is an important first-line task for presymptomatic cardiovascular disease diagnosis. In several recent studies, deep learning models have shown…

Image and Video Processing · Electrical Eng. & Systems 2024-10-01 Sanguk Park , Minyoung Chung

3D shape representations that accommodate learning-based 3D reconstruction are an open problem in machine learning and computer graphics. Previous work on neural 3D reconstruction demonstrated benefits, but also limitations, of point cloud,…

Computer Vision and Pattern Recognition · Computer Science 2020-11-25 Jun Gao , Wenzheng Chen , Tommy Xiang , Clement Fuji Tsang , Alec Jacobson , Morgan McGuire , Sanja Fidler