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Subgraph representation learning based on Graph Neural Network (GNN) has exhibited broad applications in scientific advancements, such as predictions of molecular structure-property relationships and collective cellular function. In…

Machine Learning · Computer Science 2022-10-17 Yili Shen , Xiao Liu , Cheng-Wei Ju , Jiaxu Yan , Jun Yi , Zhou Lin , Hui Guan

Self-supervised learning of graph neural networks (GNNs) aims to learn an accurate representation of the graphs in an unsupervised manner, to obtain transferable representations of them for diverse downstream tasks. Predictive learning and…

Machine Learning · Computer Science 2022-10-11 Dongki Kim , Jinheon Baek , Sung Ju Hwang

This paper studies learning on text-attributed graphs (TAGs), where each node is associated with a text description. An ideal solution for such a problem would be integrating both the text and graph structure information with large language…

Machine Learning · Computer Science 2023-03-02 Jianan Zhao , Meng Qu , Chaozhuo Li , Hao Yan , Qian Liu , Rui Li , Xing Xie , Jian Tang

To keep pace with the rapid advancements in design complexity within modern computing systems, directed graph representation learning (DGRL) has become crucial, particularly for encoding circuit netlists, computational graphs, and…

Machine Learning · Computer Science 2024-10-10 Haoyu Wang , Yinan Huang , Nan Wu , Pan Li

Graph representation learning (GRL) has evolved from topology-only graph embeddings to task-specific supervised GNNs, and more recently to reusable representations and graph foundation models (GFMs). However, existing evaluations mainly…

Machine Learning · Computer Science 2026-05-08 Xiaoguang Guo , Zehong Wang , Ziming Li , Shawn Spitzel , Soonwoo Kwon , Tianyi Ma , Yanfang Ye , Chuxu Zhang

Graph Representation Learning (GRL) has become essential for modern graph data mining and learning tasks. GRL aims to capture the graph's structural information and exploit it in combination with node and edge attributes to compute…

Machine Learning · Computer Science 2021-09-08 Marinos Poiitis , Pavlos Sermpezis , Athena Vakali

Contrastive learning has emerged as a premier method for learning representations with or without supervision. Recent studies have shown its utility in graph representation learning for pre-training. Despite successes, the understanding of…

Machine Learning · Computer Science 2023-02-07 Amur Ghose , Yingxue Zhang , Jianye Hao , Mark Coates

Molecular Machine Learning (ML) bears promise for efficient molecule property prediction and drug discovery. However, labeled molecule data can be expensive and time-consuming to acquire. Due to the limited labeled data, it is a great…

Machine Learning · Computer Science 2022-04-01 Yuyang Wang , Jianren Wang , Zhonglin Cao , Amir Barati Farimani

Graph representation learning has emerged as a cornerstone for tasks like node classification and link prediction, yet prevailing self-supervised learning (SSL) methods face challenges such as computational inefficiency, reliance on…

Machine Learning · Computer Science 2025-09-04 Srinitish Srinivasan , Omkumar CU

This paper focuses on learning representation on the whole graph level in an unsupervised manner. Learning graph-level representation plays an important role in a variety of real-world issues such as molecule property prediction, protein…

Machine Learning · Computer Science 2024-01-08 Ge Wang , Zelin Zang , Jiangbin Zheng , Jun Xia , Stan Z. Li

Graph class-incremental learning (GCIL) allows graph neural networks (GNNs) to adapt to evolving graph analytical tasks by incrementally learning new class knowledge while retaining knowledge of old classes. Existing GCIL methods primarily…

Machine Learning · Computer Science 2025-07-24 Jiazhen Chen , Zheng Ma , Sichao Fu , Mingbin Feng , Tony S. Wirjanto , Weihua Ou

Graph neural networks (GNNs) have become a powerful tool for processing graph-structured data but still face challenges in effectively aggregating and propagating information between layers, which limits their performance. We tackle this…

Machine Learning · Computer Science 2023-02-09 Maxim Fishman , Chaim Baskin , Evgenii Zheltonozhskii , Almog David , Ron Banner , Avi Mendelson

Graph neural networks (GNNs) have struggled to outperform traditional optimization methods on combinatorial problems, limiting their practical impact. We address this gap by introducing a novel chaining procedure for the graph alignment…

Machine Learning · Computer Science 2025-10-06 Marc Lelarge

We introduce a novel approach to graph-level representation learning, which is to embed an entire graph into a vector space where the embeddings of two graphs preserve their graph-graph proximity. Our approach, UGRAPHEMB, is a general…

Machine Learning · Computer Science 2019-06-04 Yunsheng Bai , Hao Ding , Yang Qiao , Agustin Marinovic , Ken Gu , Ting Chen , Yizhou Sun , Wei Wang

Graph representation learning (GRL) is a powerful technique for learning low-dimensional vector representation of high-dimensional and often sparse graphs. Most studies explore the structure and metadata associated with the graph using…

Machine Learning · Computer Science 2020-04-02 Zekarias T. Kefato , Sarunas Girdzijauskas

Self-supervised graph representation learning (GRL) typically generates paired graph augmentations from each graph to infer similar representations for augmentations of the same graph, but distinguishable representations for different…

Machine Learning · Computer Science 2025-11-18 Zhuomin Chen , Jingchao Ni , Hojat Allah Salehi , Xu Zheng , Esteban Schafir , Farhad Shirani , Dongsheng Luo

This paper presents a novel self-supervised learning method for handling conversational documents consisting of transcribed text of human-to-human conversations. One of the key technologies for understanding conversational documents is…

Computation and Language · Computer Science 2021-02-17 Ryo Masumura , Naoki Makishima , Mana Ihori , Akihiko Takashima , Tomohiro Tanaka , Shota Orihashi

Due to the superior performance of Graph Neural Networks (GNNs) in various domains, there is an increasing interest in the GNN explanation problem "\emph{which fraction of the input graph is the most crucial to decide the model's…

Machine Learning · Computer Science 2022-07-04 Qinghua Zheng , Jihong Wang , Minnan Luo , Yaoliang Yu , Jundong Li , Lina Yao , Xiaojun Chang

Recently, contrastive learning (CL) has emerged as a successful method for unsupervised graph representation learning. Most graph CL methods first perform stochastic augmentation on the input graph to obtain two graph views and maximize the…

Machine Learning · Computer Science 2021-03-01 Yanqiao Zhu , Yichen Xu , Feng Yu , Qiang Liu , Shu Wu , Liang Wang

Self-supervision is recently surging at its new frontier of graph learning. It facilitates graph representations beneficial to downstream tasks; but its success could hinge on domain knowledge for handcraft or the often expensive trials and…

Machine Learning · Computer Science 2022-01-06 Yuning You , Tianlong Chen , Zhangyang Wang , Yang Shen