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Semantic segmentation of Very High Resolution (VHR) remote sensing images is a fundamental task for many applications. However, large variations in the scales of objects in those VHR images pose a challenge for performing accurate semantic…

Computer Vision and Pattern Recognition · Computer Science 2023-05-02 Yuanzhi Cai , Lei Fan , Yuan Fang

Semantic segmentation in high-resolution agricultural imagery demands models that strike a careful balance between accuracy and computational efficiency to enable deployment in practical systems. In this work, we propose DAS-SK, a novel…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Mei Ling Chee , Thangarajah Akilan , Aparna Ravindra Phalke , Kanchan Keisham

Prediction of protein-ligand complexes for flexible proteins remains still a challenging problem in computational structural biology and drug design. Here we present two novel deep neural network approaches with significant improvement in…

Biomolecules · Quantitative Biology 2020-08-28 Amr H. Mahmoud , Jonas F. Lill , Markus A. Lill

Background: Virtual Screening (VS) has become an essential tool in drug discovery, enabling the rapid and cost-effective identification of potential bioactive molecules. Among recent advancements, Graph Neural Networks (GNNs) have gained…

Quantitative Methods · Quantitative Biology 2025-10-27 Salvatore Contino , Paolo Sortino , Maria Rita Gulotta , Ugo Perricone , Roberto Pirrone

Graph neural networks (GNNs) have emerged as a powerful tool to process graph-based data in fields like communication networks, molecular interactions, chemistry, social networks, and neuroscience. GNNs are characterized by the ultra-sparse…

Hardware Architecture · Computer Science 2023-07-14 Nanda K. Unnikrishnan , Joe Gould , Keshab K. Parhi

Automated visual inspection in the semiconductor industry aims to detect and classify manufacturing defects utilizing modern image processing techniques. While an earliest possible detection of defect patterns allows quality control and…

Machine Learning · Computer Science 2024-06-11 Tobias Schlosser , Frederik Beuth , Michael Friedrich , Danny Kowerko

Deep Neural Network(DNN) techniques have been prevalent in software engineering. They are employed to faciliatate various software engineering tasks and embedded into many software applications. However, analyzing and understanding their…

Software Engineering · Computer Science 2019-06-04 Xufan Zhang , Ziyue Yin , Yang Feng , Qingkai Shi , Jia Liu , Zhenyu Chen

With the rapid increase in the amount of public code repositories, developers maintain a great desire to retrieve precise code snippets by using natural language. Despite existing deep learning based approaches(e.g., DeepCS and MMAN) have…

Software Engineering · Computer Science 2021-10-19 Chen Zeng , Yue Yu , Shanshan Li , Xin Xia , Zhiming Wang , Mingyang Geng , Bailin Xiao , Wei Dong , Xiangke Liao

Fiber-optic sensing, especially distributed optical fiber vibration (DVS) sensing, is gaining importance in internet of things (IoT) applications, such as industrial safety monitoring and intrusion detection. Despite their wide application,…

Systems and Control · Electrical Eng. & Systems 2024-08-23 Zhongyao Luo , Hao Wu , Zhao Ge , Ming Tang

Feed-forward 3D foundation models face a key challenge: the quadratic computational cost introduced by global attention, which severely limits scalability as input length increases. Concurrent acceleration methods, such as token merging,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Xinze Li , Pengxu Chen , Yiyuan Wang , Weifeng Su , Wentao Cheng

Protein-ligand docking is an in silico tool used to screen potential drug compounds for their ability to bind to a given protein receptor within a drug-discovery campaign. Experimental drug screening is expensive and time consuming, and it…

Recent progress in semantic segmentation has been driven by improving the spatial resolution under Fully Convolutional Networks (FCNs). To address this problem, we propose a Stacked Deconvolutional Network (SDN) for semantic segmentation.…

Computer Vision and Pattern Recognition · Computer Science 2017-08-17 Jun Fu , Jing Liu , Yuhang Wang , Hanqing Lu

Multi-View Stereo (MVS) is a core task in 3D computer vision. With the surge of novel deep learning methods, learned MVS has surpassed the accuracy of classical approaches, but still relies on building a memory intensive dense cost volume.…

Computer Vision and Pattern Recognition · Computer Science 2022-06-16 Radu Alexandru Rosu , Sven Behnke

Graph Neural Networks (GNNs) have received considerable attention since its introduction. It has been widely applied in various fields due to its ability to represent graph structured data. However, the application of GNNs is constrained by…

Neurons and Cognition · Quantitative Biology 2023-09-20 Yihan Wu , Tao Chang , Peng Xu , Yangsong Zhang

Molecular docking is a key computational tool utilized to predict the binding conformations of small molecules to protein targets, which is fundamental in the design of novel drugs. Despite recent advancements in geometric deep…

Biomolecules · Quantitative Biology 2023-12-01 Jiaxian Yan , Zaixi Zhang , Kai Zhang , Qi Liu

End-to-end performance estimation and measurement of deep neural network (DNN) systems become more important with increasing complexity of DNN systems consisting of hardware and software components. The methodology proposed in this paper…

Machine Learning · Computer Science 2019-11-19 Michael J. Klaiber , Sebastian Vogel , Axel Acosta , Robert Korn , Leonardo Ecco , Kristine Back , Andre Guntoro , Ingo Feldner

SCAN (Structural Clustering Algorithm for Networks) is a well-studied, widely used graph clustering algorithm. For large graphs, however, sequential SCAN variants are prohibitively slow, and parallel SCAN variants do not effectively share…

Databases · Computer Science 2021-04-01 Tom Tseng , Laxman Dhulipala , Julian Shun

Robustness and generalizability in medical image segmentation are often hindered by scarcity and limited diversity of training data, which stands in contrast to the variability encountered during inference. While conventional strategies --…

Computer Vision and Pattern Recognition · Computer Science 2024-12-18 Yimu Pan , Sitao Zhang , Alison D. Gernand , Jeffery A. Goldstein , James Z. Wang

Virtual screening of small molecules against protein targets can accelerate drug discovery and development by predicting drug-target interactions (DTIs). However, structure-based methods like molecular docking are too slow to allow for…

The deep network model, with the majority built on neural networks, has been proved to be a powerful framework to represent complex data for high performance machine learning. In recent years, more and more studies turn to nonneural network…

Machine Learning · Computer Science 2019-02-18 Jingyuan Wang , Kai Feng , Junjie Wu