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This paper develops a methodology for representing machine learning models as models of formal theories, grounded in the perspective that machine learning models are a form of database and that databases are models of theories in coherent…

Category Theory · Mathematics 2026-04-17 Matthew Pugh , Jo Grundy , Corina Cirstea , Nick Harris

Attribution methods can provide powerful insights into the reasons for a classifier's decision. We argue that a key desideratum of an explanation method is its robustness to input hyperparameters which are often randomly set or empirically…

Computer Vision and Pattern Recognition · Computer Science 2020-04-14 Naman Bansal , Chirag Agarwal , Anh Nguyen

Cooperative game theory methods, notably Shapley values, have significantly enhanced machine learning (ML) interpretability. However, existing explainable AI (XAI) frameworks mainly attribute average model predictions, overlooking…

Artificial Intelligence · Computer Science 2025-05-20 Marouane Il Idrissi , Agathe Fernandes Machado , Ewen Gallic , Arthur Charpentier

We introduce combinatorial interpretability, a methodology for understanding neural computation by analyzing the combinatorial structures in the sign-based categorization of a network's weights and biases. We demonstrate its power through…

Machine Learning · Computer Science 2025-05-07 Micah Adler , Dan Alistarh , Nir Shavit

We present a neural model for representing snippets of code as continuous distributed vectors ("code embeddings"). The main idea is to represent a code snippet as a single fixed-length $\textit{code vector}$, which can be used to predict…

Machine Learning · Computer Science 2018-10-31 Uri Alon , Meital Zilberstein , Omer Levy , Eran Yahav

Interpretability is an important area of research for safe deployment of machine learning systems. One particular type of interpretability method attributes model decisions to input features. Despite active development, quantitative…

Machine Learning · Computer Science 2019-11-06 Mengjiao Yang , Been Kim

Feature importance estimates that inform users about the degree to which given inputs influence the output of a predictive model are crucial for understanding, validating, and interpreting machine-learning models. However, providing fast…

Machine Learning · Computer Science 2019-10-29 Patrick Schwab , Walter Karlen

MOTIVATION: Proteins fold into complex structures that are crucial for their biological functions. Experimental determination of protein structures is costly and therefore limited to a small fraction of all known proteins. Hence, different…

Biomolecules · Quantitative Biology 2018-04-18 David Menéndez Hurtado , Karolis Uziela , Arne Elofsson

Estimation of distribution algorithms are evolutionary algorithms that use extracted information from the population instead of traditional genetic operators to generate new solutions. This information is represented as a probabilistic…

Neural and Evolutionary Computing · Computer Science 2022-03-25 Saeed Ghadiri , Amin Nikanjam

We introduce a new, rigorously-formulated Bayesian meta-learning algorithm that learns a probability distribution of model parameter prior for few-shot learning. The proposed algorithm employs a gradient-based variational inference to infer…

Machine Learning · Computer Science 2022-03-21 Cuong Nguyen , Thanh-Toan Do , Gustavo Carneiro

Code language models are increasingly adopted for both understanding and generative tasks. Despite their success, these models frequently produce overconfident incorrect predictions and underconfident correct predictions, undermining their…

Software Engineering · Computer Science 2026-05-20 Ravishka Rathnasuriya , Wei Yang

Probabilistic logic programs are logic programs in which some of the facts are annotated with probabilities. This paper investigates how classical inference and learning tasks known from the graphical model community can be tackled for…

Artificial Intelligence · Computer Science 2020-02-19 Daan Fierens , Guy Van den Broeck , Joris Renkens , Dimitar Shterionov , Bernd Gutmann , Ingo Thon , Gerda Janssens , Luc De Raedt

Classical models for supervised machine learning, such as decision trees, are efficient and interpretable predictors, but their quality is highly dependent on the particular choice of input features. Although neural networks can learn…

Machine Learning · Computer Science 2025-10-17 Gabriel Poesia , Georgia Gabriela Sampaio

We study the problem of attributing the prediction of a deep network to its input features, a problem previously studied by several other works. We identify two fundamental axioms---Sensitivity and Implementation Invariance that attribution…

Machine Learning · Computer Science 2017-06-14 Mukund Sundararajan , Ankur Taly , Qiqi Yan

Applied Data Scientists throughout various industries are commonly faced with the challenging task of encoding high-cardinality categorical features into digestible inputs for machine learning algorithms. This paper describes a Bayesian…

Machine Learning · Computer Science 2019-05-01 Austin Slakey , Daniel Salas , Yoni Schamroth

Algorithms for machine learning-guided design, or design algorithms, use machine learning-based predictions to propose novel objects with desired property values. Given a new design task -- for example, to design novel proteins with high…

Machine Learning · Computer Science 2025-07-04 Clara Fannjiang , Ji Won Park

Understanding why a model makes a certain prediction can be as crucial as the prediction's accuracy in many applications. However, the highest accuracy for large modern datasets is often achieved by complex models that even experts struggle…

Artificial Intelligence · Computer Science 2017-11-28 Scott Lundberg , Su-In Lee

This paper discusses predictive inference and feature selection for generalized linear models with scarce but high-dimensional data. We argue that in many cases one can benefit from a decision theoretically justified two-stage approach:…

Machine Learning · Statistics 2020-11-09 Juho Piironen , Markus Paasiniemi , Aki Vehtari

Predictive coding is an influential model of cortical neural activity. It proposes that perceptual beliefs are furnished by sequentially minimising "prediction errors" - the differences between predicted and observed data. Implicit in this…

Neurons and Cognition · Quantitative Biology 2022-04-07 Alexander Tschantz , Beren Millidge , Anil K Seth , Christopher L Buckley

The proliferation of complex, black-box AI models has intensified the need for techniques that can explain their decisions. Feature attribution methods have become a popular solution for providing post-hoc explanations, yet the field has…

Machine Learning · Computer Science 2025-11-13 Xinpeng Li , Kai Ming Ting