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Statistical inference in evolutionary models with site-dependence is a long-standing challenge in phylogenetics and computational biology. We consider the problem of approximating marginal sequence likelihoods under dependent-site models of…

Computation · Statistics 2025-11-12 Joseph Mathews , Scott C. Schmidler

We study the problem of deterministic approximate counting of matchings and independent sets in graphs of bounded connective constant. More generally, we consider the problem of evaluating the partition functions of the monomer-dimer model…

Data Structures and Algorithms · Computer Science 2014-10-10 Alistair Sinclair , Piyush Srivastava , Daniel Štefankovič , Yitong Yin

Using the optimal velocity (OV) model as an example, we show that in the non-linear regime there is an emergent quantity that gives the extremum headways in the cluster formation, as well as the coexistence curve separating the absolute…

Statistical Mechanics · Physics 2016-05-11 Bo Yang , Xihua Xu , John Z. F. Pang , Christopher Monterola

Random walk centrality is a fundamental metric in graph mining for quantifying node importance and influence, defined as the weighted average of hitting times to a node from all other nodes. Despite its ability to capture rich graph…

Artificial Intelligence · Computer Science 2025-10-24 Changan Liu , Zixuan Xie , Ahad N. Zehmakan , Zhongzhi Zhang

Most methods proposed to uncover communities in complex networks rely on combinatorial graph properties. Usually an edge-counting quality function, such as modularity, is optimized over all partitions of the graph compared against a null…

Physics and Society · Physics 2015-02-17 Renaud Lambiotte , Jean-Charles Delvenne , Mauricio Barahona

We introduce a variational implementation of cluster perturbation theory (CPT) to address the dynamics of spin systems driven out of equilibrium. We benchmark the method with the quantum Ising model subject to a sudden quench of the…

Strongly Correlated Electrons · Physics 2016-12-07 Mohammad Zhian Asadzadeh , Michele Fabrizio , Enrico Arrigoni

Given a graph $G$, the hard-core model defines a probability distribution over its independent sets, assigning to each set of size $k$ a probability of $\frac{\lambda^k}{Z}$, where $\lambda>0$ is a parameter known as the \emph{fugacity} and…

Data Structures and Algorithms · Computer Science 2025-11-24 Malory Marin

Genuinely critical dynamics have been proposed to organize many natural and social systems, yet exact criticality is usually thought to preclude stationarity because the mean activity diverges. I show that this conclusion is not generally…

General Physics · Physics 2026-05-26 Didier Sornette

Slow mixing is the central hurdle when working with Markov chains, especially those used for Monte Carlo approximations (MCMC). In many applications, it is only of interest to estimate the stationary expectations of a small set of…

Statistics Theory · Mathematics 2016-10-04 Maxim Rabinovich , Aaditya Ramdas , Michael I. Jordan , Martin J. Wainwright

Markov chain Monte Carlo (MCMC) methods are often used in clustering since they guarantee asymptotically exact expectations in the infinite-time limit. In finite time, though, slow mixing often leads to poor performance. Modern computing…

Methodology · Statistics 2022-02-24 Tin D. Nguyen , Brian L. Trippe , Tamara Broderick

In this paper we study the critical behaviour of the fully-connected p-colours Potts model at the dynamical transition. In the framework of Mode Coupling Theory (MCT), the time autocorrelation function displays a two step relaxation, with…

Disordered Systems and Neural Networks · Physics 2012-06-20 Francesco Caltagirone , Giorgio Parisi , Tommaso Rizzo

We show that short-range correlations have a dramatic impact on the steady-state phase diagram of quantum driven-dissipative systems. This effect, never observed in equilibrium, follows from the fact that ordering in the steady state is of…

Statistical Mechanics · Physics 2016-07-29 Jiasen Jin , Alberto Biella , Oscar Viyuela , Leonardo Mazza , Jonathan Keeling , Rosario Fazio , Davide Rossini

We introduce a solvable model of a measurement-induced phase transition (MIPT) in a deterministic but chaotic dynamical system with a positive Lyapunov exponent. In this setup, an observer only has a probabilistic description of the system…

Statistical Mechanics · Physics 2025-08-04 Federico Gerbino , Guido Giachetti , Pierre Le Doussal , Andrea De Luca

A procedure to predict the occurrence of periodic clusters in a system of globally coupled maps displaying a constant mean field is presented. The method employs the analogy between a system of globally coupled maps and a single map driven…

chao-dyn · Physics 2015-06-24 A. Parravano , M. G. Cosenza

Nested sampling is an efficient algorithm for the calculation of the Bayesian evidence and posterior parameter probability distributions. It is based on the step-by-step exploration of the parameter space by Monte Carlo sampling with a…

Computation · Statistics 2024-01-30 M. Trassinelli , Pierre Ciccodicola

We consider a random connection model (RCM) $\xi$ driven by a Poisson process $\eta$. We derive exponential moment bounds for an arbitrary cluster, provided that the intensity $t$ of $\eta$ is below a certain critical intensity $t_T$. The…

Probability · Mathematics 2026-02-05 Mikhail Chebunin , Günter Last

The structure of many complex networks includes edge directionality and weights on top of their topology. Network analysis that can seamlessly consider combination of these properties are desirable. In this paper, we study two important…

Social and Information Networks · Computer Science 2021-11-24 Frederique Oggier , Silivanxay Phetsouvanh , Anwitaman Datta

The predictions of the mode-coupling theory (MCT) for the dynamical arrest scenarios in a partly pinned (PP) fluid system are reported. The corresponding dynamical phase diagram is found to be very similar to that of a related…

Disordered Systems and Neural Networks · Physics 2011-11-21 Vincent Krakoviack

A wide range of (multivariate) temporal (1D) and spatial (2D) data analysis tasks, such as grouping vehicle sensor trajectories, can be formulated as clustering with given metric constraints. Existing metric-constrained clustering…

Machine Learning · Computer Science 2024-06-04 Zhangyu Wang , Gengchen Mai , Krzysztof Janowicz , Ni Lao

Motivated by applications of large-scale graph clustering, we study random-walk-based LOCAL algorithms whose running times depend only on the size of the output cluster, rather than the entire graph. All previously known such algorithms…

Data Structures and Algorithms · Computer Science 2013-11-08 Zeyuan Allen Zhu , Silvio Lattanzi , Vahab Mirrokni