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Evolutionary accumulation models (EvAMs) are an emerging class of machine learning methods designed to infer the evolutionary pathways by which features are acquired. Applications include cancer evolution (accumulation of mutations),…

Populations and Evolution · Quantitative Biology 2026-03-13 Iain G. Johnston

Graph Foundation Models (GFMs) are emerging as a significant research topic in the graph domain, aiming to develop graph models trained on extensive and diverse data to enhance their applicability across various tasks and domains.…

Machine Learning · Computer Science 2024-06-03 Haitao Mao , Zhikai Chen , Wenzhuo Tang , Jianan Zhao , Yao Ma , Tong Zhao , Neil Shah , Mikhail Galkin , Jiliang Tang

Feature transformation aims to reconstruct the feature space of raw features to enhance the performance of downstream models. However, the exponential growth in the combinations of features and operations poses a challenge, making it…

Machine Learning · Computer Science 2024-12-19 Nanxu Gong , Chandan K. Reddy , Wangyang Ying , Haifeng Chen , Yanjie Fu

Probabilistic Graphical Models are often used to understand dynamics of a system. They can model relationships between features (nodes) and the underlying distribution. Theoretically these models can represent very complex dependency…

Machine Learning · Computer Science 2023-08-21 Harsh Shrivastava , Urszula Chajewska

Convolutional neural networks belong to the most successul image classifiers, but the adaptation of their network architecture to a particular problem is computationally expensive. We show that an evolutionary algorithm saves training time…

Neural and Evolutionary Computing · Computer Science 2018-12-20 Jonas Prellberg , Oliver Kramer

Fuzzing is a widely used technique for detecting software bugs and vulnerabilities. Most popular fuzzers generate new inputs using an evolutionary search to maximize code coverage. Essentially, these fuzzers start with a set of seed inputs,…

Software Engineering · Computer Science 2020-09-14 Dongdong She , Rahul Krishna , Lu Yan , Suman Jana , Baishakhi Ray

Probabilistic graphical models (PGMs) have become a popular tool for computational analysis of biological data in a variety of domains. But, what exactly are they and how do they work? How can we use PGMs to discover patterns that are…

Quantitative Methods · Quantitative Biology 2010-02-22 Edoardo M Airoldi

In case of decision making problems, classification of pattern is a complex and crucial task. Pattern classification using multilayer perceptron (MLP) trained with back propagation learning becomes much complex with increase in number of…

Neural and Evolutionary Computing · Computer Science 2016-01-15 Tirtharaj Dash , H. S. Behera

The analysis of the evolutionary dynamics of a population with many polymorphic loci is challenging since a large number of possible genotypes needs to be tracked. In the absence of analytical solutions, forward computer simulations are an…

Populations and Evolution · Quantitative Biology 2012-07-31 Fabio Zanini , Richard A. Neher

Learning mappings between functional spaces, also known as function-on-function regression, is a fundamental problem in functional data analysis with broad applications, including spatiotemporal forecasting, curve prediction, and climate…

Machine Learning · Computer Science 2026-04-07 Matthew Lowery , Zhitong Xu , Da Long , Keyan Chen , Daniel S. Johnson , Yang Bai , Varun Shankar , Shandian Zhe

Genetic Regulatory Networks (GRNs) plays a vital role in the understanding of complex biological processes. Modeling GRNs is significantly important in order to reveal fundamental cellular processes, examine gene functions and understanding…

Computational Engineering, Finance, and Science · Computer Science 2012-05-10 Khalid Raza , Rafat Parveen

Convolutional Neural Networks (CNNs) are artificial learning systems typically based on two operations: convolution, which implements feature extraction through filtering, and pooling, which implements dimensionality reduction. The impact…

Machine Learning · Computer Science 2022-02-18 Dimitrios E. Diamantis , Dimitris K. Iakovidis

A number of representation schemes have been presented for use within Learning Classifier Systems, ranging from binary encodings to Neural Networks, and more recently Dynamical Genetic Programming (DGP). This paper presents results from an…

Artificial Intelligence · Computer Science 2013-04-29 Richard J. Preen , Larry Bull

As neural networks are increasingly being applied to real-world applications, mechanisms to address distributional shift and sequential task learning without forgetting are critical. Methods incorporating network expansion have shown…

Machine Learning · Computer Science 2021-03-26 Vinay Kumar Verma , Kevin J Liang , Nikhil Mehta , Piyush Rai , Lawrence Carin

A recent line of research concerns the problem of soft happy colouring (SHC), which requires that a partially coloured graph be extended to a complete colouring to maximise local agreements, so that as many vertices as possible end up…

Discrete Mathematics · Computer Science 2025-12-08 Mohammad Hadi Shekarriz , Dhananjay Thiruvady , Asef Nazari

While reinforcement learning from scratch has shown impressive results in solving sequential decision-making tasks with efficient simulators, real-world applications with expensive interactions require more sample-efficient agents.…

Machine Learning · Computer Science 2025-09-22 Remo Sasso , Michelangelo Conserva , Dominik Jeurissen , Paulo Rauber

Machine learning and optimization algorithms have been widely applied in the design and optimization for photonic devices. In this article, we briefly review recent progress of this field of research and show some data-driven applications…

Optics · Physics 2020-07-15 Tian Zhang , Qi Liu , Yihang Dan , Shuai Yu , Xu Han , Jian Dai , Kun Xu

Fuzzy General Grey Cognitive Map (FGGCM) and Fuzzy Grey Cognitive Map (FGCM) are extensions of Fuzzy Cognitive Map (FCM) in terms of uncertainty. FGGCM allows for the processing of general grey number with multiple intervals, enabling FCM…

Systems and Control · Electrical Eng. & Systems 2024-09-10 Xudong Gao , Xiao Guang Gao , Jia Rong , Ni Li , Yifeng Niu , Jun Chen

Foundation models have emerged as critical components in a variety of artificial intelligence applications, and showcase significant success in natural language processing and several other domains. Meanwhile, the field of graph machine…

Machine Learning · Computer Science 2025-03-11 Jiawei Liu , Cheng Yang , Zhiyuan Lu , Junze Chen , Yibo Li , Mengmei Zhang , Ting Bai , Yuan Fang , Lichao Sun , Philip S. Yu , Chuan Shi

Interpretable clustering algorithms aim to group similar data points while explaining the obtained groups to support knowledge discovery and pattern recognition tasks. While most approaches to interpretable clustering construct clusters…

Machine Learning · Computer Science 2024-08-27 Nakul Upadhya , Eldan Cohen