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Depletion forces play a role in the compaction and de-compation of chromosomal material in simple cells but it remains debatable whether they are sufficient to account for chromosomal collapse. We present coarse-grained molecular dynamics…

Soft Condensed Matter · Physics 2015-06-22 Tyler N. Shendruk , Martin Bertrand , Hendrick W. de Haan , James L. Harden , Gary W. Slater

Dielectrophoretic (DEP) sensing is an extremely important sensing modality that enables the rapid capture and detection of polarizable particles of nano-scale size. This makes it a versatile tool for applications in medical diagnostics,…

Mesoscale and Nanoscale Physics · Physics 2025-11-26 Nezhueyotl Izquierdo , Ruixue Li , Peter R. Christenson , Sang-Hyun Oh , Steven J. Koester

We study a generic model of self-assembling chains which can branch and form networks with branching points (junctions) of arbitrary functionality. The physical realizations include physical gels, wormlike micells, dipolar fluids and…

Soft Condensed Matter · Physics 2009-11-07 A. G. Zilman , S. A. Safran

Motivated by the idea of using simple macroscopic examples to illustrate the physics of complex systems, we modify a historic experimental setup in which interacting floating magnets spontaneously self-assemble into ordered clusters. By…

Soft Condensed Matter · Physics 2024-12-20 P. D. S. de Lima , A. Lyons , A. Irannezhad , J. M. de Araújo , S. Hutzler , M. S. Ferreira

We numerically study light scattering and absorption in self-similar aggregates of dielectric nanoparticles, as generated by simulated ballistic deposition upon a surface starting from a single seed particle. The resulting structure…

Materials Science · Physics 2015-06-15 Matteo Gerosa , Carlo Enrico Bottani

In situ electron microscopy is a key tool for understanding the mechanisms driving novel phenomena in 2D structures. Unfortunately, due to various practical challenges, technologically relevant 2D heterostructures prove challenging to…

Magnetic Janus particles allow access to complex, nonlinear assembled structures that may enable interesting new magnetorheological (MR) fluids with uniquely engineered field responses. However, the overwhelming size of the parameter space…

Soft Condensed Matter · Physics 2026-01-06 Eric A. McPherson , Kenneth Kroenlein , Ilona Kretzschmar

Flexoelectricity is characterised by the coupling of the gradient of the deformation and the electrical polarization in a dielectric material. A novel micromorphic approach is presented to accommodate the resulting higher-order gradient…

Classical Physics · Physics 2023-07-19 Andrew McBride , Denis Davydov , Paul Steinmann

The stochastic Eden model of charged particles aggregation in two-dimensional systems is presented. This model is governed by two parameters: screening length of electrostatic interaction, $\lambda $, and short range attraction energy, $E$.…

Statistical Mechanics · Physics 2009-10-31 Y. V. Ivanenko , N. I. Lebovka , N. V. Vygornitskii

Motivated by recent experimental findings in chemical synthesis of colloidal particles, we draw an analogy between self-assembly processes occurring in biological systems (e.g. protein folding) and a new exciting possibility in the field of…

Soft Condensed Matter · Physics 2018-02-14 Achille Giacometti

Many types of mammalian cells exert active contractile forces and mechanically deform their elastic substrate, to accomplish biological functions such as cell migration. These substrate deformations provide a mechanism by which cells can…

Soft Condensed Matter · Physics 2022-02-22 Subhaya Bose , Patrick S. Noerr , Ajay Gopinathan , Arvind Gopinath , Kinjal Dasbiswas

Several methods are constructed for large-scale electronic structure calculations. Test calculations are carried out with up to 10^7 atoms. As an application, cleavage process of silicon is investigated by molecular dynamics simulation with…

Materials Science · Physics 2007-05-23 T. Hoshi , R. Takayama , Y. Iguchi , T. Fujiwara

Developments in dynamical systems theory provides new support for the macroscale modelling of pdes and other microscale systems such as Lattice Boltzmann, Monte Carlo or Molecular Dynamics simulators. By systematically resolving subgrid…

Numerical Analysis · Mathematics 2012-01-18 A. J. Roberts , Tony MacKenzie , J. E. Bunder

The scanning transmission electron microscope, a workhorse instrument in materials characterization, is being transformed into an atomic-scale material manipulation platform. With an eye on the trajectory of recent developments and the…

Applied Physics · Physics 2023-08-15 Ondrej Dyck , Andrew R. Lupini , Stephen Jesse

Micrometre sized colloidal particles can be viewed as large atoms with tailorable size, shape and interactions. These building blocks can assemble into extremely rich structures and phases, in which the thermal motions of particles can be…

Soft Condensed Matter · Physics 2017-11-10 Bo Li , Di Zhou , Yilong Han

Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force…

Soft Condensed Matter · Physics 2017-10-11 Casper van der Wel , Doris Heinrich , Daniela J. Kraft

We combine small angle scattering experiments and simulations to investigate the internal structure and interactions of composite Poly(N-isopropylacrylamide)-Poly(ethylene glycol) (PNIPAM-PEG) microgels. At low temperatures the…

The use of molecular dynamics (MD) simulations has led to promising results to unravel the atomistic origins of adhesive wear, and in particular for the onset of wear at nanoscale surface asperities. However, MD simulations come with a high…

Soft Condensed Matter · Physics 2022-06-29 Son Pham-Ba , Jean-François Molinari

In clouds of suspended particles (grains, droplets, spheres, crystals, etc.), collisions electrify the particles and the clouds, producing large electric potential differences over large scales. This is seen most spectacularly in the…

Soft Condensed Matter · Physics 2017-07-28 Freja Nordsiek , Daniel P. Lathrop

The quasistatic behavior of a simple 2D model of a cohesive powder under isotropic loads is investigated by Discrete Element simulations. The loose packing states, as studied in a previous paper, undergo important structural changes under…

Materials Science · Physics 2008-10-27 Francisco Gilabert , Jean-Noël Roux , Antonio Castellanos
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