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Big graphs (networks) arising in numerous application areas pose significant challenges for graph analysts as these graphs grow to billions of nodes and edges and are prohibitively large to fit in the main memory. Finding the number of…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-19 Shaikh Arifuzzaman , Maleq Khan , Madhav Marathe

There are extensive studies focusing on the application scenario that all the bipartite cohesive subgraphs need to be discovered in a bipartite graph. However, we observe that, for some applications, one is interested in finding bipartite…

Databases · Computer Science 2023-08-15 Aman Abidi , Lu Chen , Rui Zhou , Chengfei Liu

Counting the number of $(p, q)$-bicliques (complete bipartite subgraphs) in a bipartite graph is a fundamental problem which plays a crucial role in numerous bipartite graph analysis applications. However, existing algorithms for counting…

Data Structures and Algorithms · Computer Science 2024-12-24 Xiaowei Ye , Rong-Hua Li , Longlong Lin , Shaojie Qiao , Guoren Wang

Subgraph enumeration problems ask to output all subgraphs of an input graph that belongs to the specified graph class or satisfy the given constraint. These problems have been widely studied in theoretical computer science. As far, many…

Data Structures and Algorithms · Computer Science 2018-07-03 Kunihiro Wasa , Takeaki Uno

Community Search (CS) aims to identify densely interconnected subgraphs corresponding to query vertices within a graph. However, existing heterogeneous graph-based community search methods need help identifying cross-group communities and…

Social and Information Networks · Computer Science 2024-01-22 JiaYi Du , Yinghao Wu , Wei Ai , Tao Meng , CanHao Xie , KeQin Li

We consider the maintenance of maximal bicliques from a dynamic bipartite graph that changes over time due to the addition or deletion of edges. When the set of edges in a graph changes, we are interested in knowing the change in the set of…

Data Structures and Algorithms · Computer Science 2017-07-27 Apurba Das , Srikanta Tirthapura

We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…

Data Structures and Algorithms · Computer Science 2013-08-02 Taku Onodera , Kunihiko Sadakane , Tetsuo Shibuya

Counting the frequency of small subgraphs is a fundamental technique in network analysis across various domains, most notably in bioinformatics and social networks. The special case of triangle counting has received much attention. Getting…

Data Structures and Algorithms · Computer Science 2014-11-19 Madhav Jha , C. Seshadhri , Ali Pinar

Tip decomposition is a crucial kernel for mining dense subgraphs in bipartite networks, with applications in spam detection, analysis of affiliation networks etc. It creates a hierarchy of vertex-induced subgraphs with varying densities…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-20 Kartik Lakhotia , Rajgopal Kannan , Viktor Prasanna , Cesar A. F. De Rose

Biclustering, also called co-clustering, block clustering, or two-way clustering, involves the simultaneous clustering of both the rows and columns of a data matrix into distinct groups, such that the rows and columns within a group display…

Optimization and Control · Mathematics 2024-12-06 Antonio M. Sudoso

Graph pattern matching involves finding exact or approximate matches for a query subgraph in a larger graph. It has been studied extensively and has strong applications in domains such as computer vision, computational biology, social…

Databases · Computer Science 2012-08-02 Sutanay Choudhury , Lawrence Holder , George Chin , John Feo

Maximal biclique enumeration is a fundamental problem in bipartite graph data analysis. Existing biclique enumeration methods mainly focus on non-attributed bipartite graphs and also ignore the \emph{fairness} of graph attributes. In this…

Data Structures and Algorithms · Computer Science 2023-03-08 Ziqi Yin , Qi Zhang , Wentao Zhang , Rong-Hua Li , Guoren Wang

Bifiltered graphs are a versatile tool for modelling relations between data points across multiple grades of a two-dimensional scale. They are especially popular in topological data analysis, where the homological properties of the induced…

Computational Geometry · Computer Science 2023-03-13 Ángel Javier Alonso , Michael Kerber , Siddharth Pritam

We study the problem of estimating the number of triangles in a graph stream. No streaming algorithm can get sublinear space on all graphs, so methods in this area bound the space in terms of parameters of the input graph such as the…

Data Structures and Algorithms · Computer Science 2019-04-18 John Kallaugher , Eric Price

We report on the phase transition of finding a complete subgraph, of specified dimensions, in a bipartite graph. Finding a complete subgraph in a bipartite graph is a problem that has growing attention in several domains, including…

Artificial Intelligence · Computer Science 2016-09-20 Roberto Alonso , Raúl Monroy , Eduardo Aguirre

Triangle counting is an important problem in graph mining. Clustering coefficients of vertices and the transitivity ratio of the graph are two metrics often used in complex network analysis. Furthermore, triangles have been used…

Data Structures and Algorithms · Computer Science 2009-06-30 Charalampos E. Tsourakakis , Mihail N. Kolountzakis , Gary L. Miller

We consider the problem of counting 4-cycles ($C_4$) in an undirected graph $G$ of $n$ vertices and $m$ edges (in bipartite graphs, 4-cycles are also often referred to as $\textit{butterflies}$). Most recently, Wang et al. (2019, 2022)…

Data Structures and Algorithms · Computer Science 2024-10-01 Paul Burkhardt , David G. Harris

Breadth-First Search (BFS) is a building block used in a wide array of graph analytics and is used in various network analysis domains: social, road, transportation, communication, and much more. Over the last two decades, network sizes…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-26 Oded Green

Many common graph data mining tasks take the form of identifying dense subgraphs (e.g. clustering, clique-finding, etc). In biological applications, the natural model for these dense substructures is often a complete bipartite graph…

Data Structures and Algorithms · Computer Science 2019-01-28 Kyle Kloster , Blair D. Sullivan , Andrew van der Poel

Recently, considerable efforts have been devoted to approximately computing the global and local (i.e., incident to each node) triangle counts of a large graph stream represented as a sequence of edges. Existing approximate triangle…

Data Structures and Algorithms · Computer Science 2018-11-27 Pinghui Wang , Peng Jia , Yiyan Qi , Yu Sun , Jing Tao , Xiaohong Guan