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Enveloped viruses enter host cells either through endocytosis, or by direct fusion of the viral membrane envelope and the membrane of the host cell. However, some viruses, such as HIV-1, HSV-1, and Epstein-Barr can enter a cell through…

Subcellular Processes · Quantitative Biology 2009-11-13 Sarah A. Nowak , Tom Chou

Viral infection requires the binding of receptors on the target cell membrane to glycoproteins, or ``spikes,'' on the viral membrane. The initial entry is usually classified as fusogenic or endocytotic. However, binding of viral spikes to…

Subcellular Processes · Quantitative Biology 2015-06-26 Tom Chou

Receptor-mediated endocytosis is an ubiquitous process through which cells internalize biological or synthetic nanoscale objects, including viruses, unicellular parasites, and nanomedical vectors for drug or gene delivery. In passive…

Biological Physics · Physics 2018-09-19 Lorenzo Di Michele , Pritam Kumar Jana , Bortolo Matteo Mognetti

We derive the equations that describe adsorption of diffusing particles onto a surface followed by additional surface kinetic steps before being transported across the interface. Multistage surface kinetics occurs during membrane protein…

Soft Condensed Matter · Physics 2007-05-23 Tom Chou , Maria R. D'Orsogna

From nutrient uptake, to chemoreception, to synaptic transmission, many systems in cell biology depend on molecules diffusing and binding to membrane receptors. Mathematical analysis of such systems often neglects the fact that receptors…

Quantitative Methods · Quantitative Biology 2021-06-16 Gregory Handy , Sean D Lawley

Receptor-mediated endocytosis requires that the energy of adhesion overcomes the deformation energy of the plasma membrane. The resulting driving force is balanced by dissipative forces, leading to deterministic dynamical equations. While…

Subcellular Processes · Quantitative Biology 2019-11-20 Felix Frey , Falko Ziebert , Ulrich S. Schwarz

Cellular uptake through the lipid membranes plays an important role in adsorbing nutrients and fighting infection and can be used for drug delivery and nanomedicine developments. Endocytosis is one of the known pathways of the cellular…

Soft Condensed Matter · Physics 2022-11-03 Amir Khosravanizadeh , Pierre Sens , Farshid Mohammad-Rafiee

We consider a model for the dynamics of growing cell populations with heterogeneous mobility and proliferation rate. The cell phenotypic state is described by a continuous structuring variable and the evolution of the local cell population…

Analysis of PDEs · Mathematics 2021-05-20 Tommaso Lorenzi , Benoît Perthame , Xinran Ruan

The physical approach of a small particle (virus, medical drug) to the cell membrane represents the crucial first step before active internalization and is governed by thermal diffusion. Using a fully analytical theory we show that the…

Fluid Dynamics · Physics 2016-02-17 Abdallah Daddi-Moussa-Ider , Achim Guckenberger , Stephan Gekle

Cardiac myocytes are the fundamental cells composing the heart muscle. The propagation of electric signals and chemical quantities through them is responsible for their nonlinear contraction and dilatation. In this study, a theoretical…

Soft Condensed Matter · Physics 2018-08-01 Pietro Lenarda , Alessio Gizzi , Marco Paggi

Cell-cell adhesion is widely hypothesised to maintain cohesion within the long streams of follower cells that trail leader subpopulations during collective migration, including in neural crest cell migration, angiogenesis, and cancer cell…

Cell Behavior · Quantitative Biology 2026-04-17 Thomas Jun Jewell , Samuel W. S. Johnson , Ruth E. Baker , Philip K. Maini

There has been an increasing recognition of the utility of models of the spatial dynamics of viral spread within tissues. Multicellular models, where cells are represented as discrete regions of space coupled to a virus density surface, are…

Quantitative Methods · Quantitative Biology 2022-08-02 Thomas Williams , James McCaw , James Osborne

We present a stochastic model which describes fronts of cells invading a wound. In the model cells can move, proliferate, and experience cell-cell adhesion. We find several qualitatively different regimes of front motion and analyze the…

Cell Behavior · Quantitative Biology 2009-11-13 Evgeniy Khain , Leonard M. Sander , Casey M. Schneider-Mizell

We consider a spatially homogeneous advection-diffusion equation in which the diffusion tensor and drift velocity are time-independent, but otherwise general. We derive asymptotic expressions, valid at large distances from a steady point…

Chaotic Dynamics · Physics 2015-05-20 John Grant , Michael Wilkinson

The interactions between diffusing molecules and membrane-bound receptors drive numerous cellular processes. In this work, we develop a spatial model of molecular interactions with membrane receptors by homogenizing the cell membrane and…

Quantitative Methods · Quantitative Biology 2025-01-24 Anil Cengiz , Sean D Lawley

We show that propagation speeds in invasion processes modeled by reaction-diffusion systems are determined by marginal spectral stability conditions, as predicted by the marginal stability conjecture. This conjecture was recently settled in…

Analysis of PDEs · Mathematics 2023-10-24 Montie Avery

In 1977 Berg & Purcell published a landmark paper entitled "Physics of Chemoreception" which examined how a bacterium can sense a chemical attractant in the fluid surrounding it. At small scales the attractant molecules move by Brownian…

Analysis of PDEs · Mathematics 2017-07-18 Andrew J. Bernoff , Alan E. Lindsay

Nanoparticles, such as viruses, can enter cells via endocytosis. During endocytosis, the cell surface wraps around the nanoparticle to effectively eat it. Prior focus has been on how nanoparticle size and shape impacts endocytosis. However,…

Soft Condensed Matter · Physics 2023-01-26 Sarthak Gupta , Christian D. Santangelo , Alison E. Patteson , J. M. Schwarz

Mathematical models describing the spatial spreading and invasion of populations of biological cells are often developed in a continuum modelling framework using reaction-diffusion equations. While continuum models based on linear diffusion…

Cellular Automata and Lattice Gases · Physics 2024-01-23 Matthew J Simpson , Keeley M Murphy , Scott W McCue , Pascal R Buenzli

Trafficking of glutamate receptors into and out of synapses is critically involved in the plasticity of excitatory synaptic transmission. Endocytosis and exocytosis of receptors have initially been thought to account alone for this…

Optics · Physics 2007-05-23 Laurent Cognet , Laurent Groc , Brahim Lounis , Daniel Choquet
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