Related papers: A Coding Theory Perspective on Multiplexed Molecul…
Multicolor in situ hybridization (mFISH) is a karyotyping technique used to detect major chromosomal alterations using fluorescent probes and imaging techniques. Manual interpretation of mFISH images is a time consuming step that can be…
Multiplex immunofluorescence (mIF) enables simultaneous single-cell quantification of multiple biomarkers within intact tissue architecture, yet its high reagent cost, multi-round staining protocols, and need for specialized imaging…
The code that combines channel estimation and error protection has received general attention recently, and has been considered a promising methodology to compensate multi-path fading effect. It has been shown by simulations that such code…
Spatial separation of suspended particles based on contrast in their physical or chemical properties forms the basis of various biological assays performed on lab-on-achip devices. To electronically acquire this information, we have…
Karyotyping is a process in which chromosomes in a dividing cell are properly stained, identified and displayed in a standard format, which helps geneticist to study and diagnose genetic factors behind various genetic diseases and for…
Quantum low-density parity-check codes are a promising candidate for fault-tolerant quantum computing with considerably reduced overhead compared to the surface code. However, the lack of a practical decoding algorithm remains a barrier to…
When analyzing communities of microorganisms from their sequenced DNA, an important task is taxonomic profiling: enumerating the presence and relative abundance of all organisms, or merely of all taxa, contained in the sample. This task can…
This paper presents an approach for side channel cryptanalysis with iterative approximate Bayesian inference, based on sequential decoding methods. Reliability information about subkey hypotheses is generated in the form of likelihoods, and…
Amplify and forward (AF) relaying is a viable strategy to extend the coverage of sub-terahertz (sub-THz) links, but inevitably propagates noise, leading to cumulative degradation across multiple hops. At the receiver, optimal decoding is…
Concatenation is a method of building long codes out of shorter ones, it attempts to meet the problem of decoding complexity by breaking the required computation into manageable segments. Concatenated Continuous Phase Frequency Shift Keying…
We investigate the problem of strong coordination over a multiple-access channel (MAC) with cribbing encoders. In this configuration, two encoders observe independent and identically distributed (i.i.d.) samples of a source random variable…
Efficient high-performance decoding of topological stabilizer codes has the potential to crucially improve the balance between logical failure rates and the number and individual error rates of the constituent qubits. High-threshold…
Motivated by DNA-based storage applications, we study the problem of reconstructing a coded sequence from multiple traces. We consider the model where the traces are outputs of independent deletion channels, where each channel deletes each…
We introduce harmonization, an ensembling method that combines several "noisy" decoders to generate highly accurate decoding predictions. Harmonized ensembles of MWPM-based decoders achieve lower logical error rates than their individual…
We provide a mathematical formulation and develop a computational framework for identifying multiple strains of microorganisms from mixed samples of DNA. Our method is applicable in public health domains where efficient identification of…
Uncovering novel drug candidates for treating complex diseases remain one of the most challenging tasks in early discovery research. To tackle this challenge, biopharma research established a standardized high content imaging protocol that…
Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…
We investigate the potentials of applying the coded caching paradigm in wireless networks. In order to do this, we investigate physical layer schemes for downlink transmission from a multiantenna transmitter to several cache-enabled users.…
This work develops a rate-distortion-based approach to stochastic Chase decoding of algebraic codes over binary memoryless symmetric (BMS) channels, replacing the heuristics traditionally used to determine flip probabilities with…
Although bulk transcriptomic analyses have significantly contributed to an enhanced comprehension of multifaceted diseases, their exploration capacity is impeded by the heterogeneous compositions of biological samples. Indeed, by averaging…