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The minimum energy path (MEP) describes the mechanism of reaction, and the energy barrier along the path can be used to calculate the reaction rate in thermal systems. The nudged elastic band (NEB) method is one of the most commonly used…

Numerical Analysis · Mathematics 2025-03-24 Xuanyu Liu , Huajie Chen , Christoph Ortner

Crumpling of a thin film leads to a unique stiff yet lightweight structure. The stiffness has been attributed to a complex interplay between four basic elements - smooth bends, sharp folds, localized points (developable cones), and…

Soft Condensed Matter · Physics 2018-01-12 Andrew B. Croll , Timothy Twohig , Theresa Elder

Polymers are a primary building block in many biomaterials, often interacting with anisotropic backgrounds. While previous studies have considered polymer dynamics within nematic solvents, rarely are the the effects of anisotropic viscosity…

The polymeric phase of nitrogen connected by the lower (than three) order N-N bonds has been long sought after for the potential application as high energy density materials. Here we report a hitherto unknown polymeric N$_2$H phase…

Materials Science · Physics 2015-03-16 Ketao Yin , Yanchao Wang , Hanyu Liu , Feng Peng , Lijun Zhang

Stretching an elastic material along one axis typically induces contraction along the transverse axes, a phenomenon known as the Poisson effect. From these strains, one can compute the specific volume, which generally either increases or,…

Soft Condensed Matter · Physics 2024-07-31 Jordan L. Shivers , Fred C. MacKintosh

We focus on polymer-grafted nanoparticles (PGNP). A PGNP is composed of two different layers: the hard core of a nanoparticle and the soft corona of grafted polymers on the surface. It is predicted that PGNPs with these two distinct layers…

Soft Condensed Matter · Physics 2022-10-11 Masanari Ishiyama , Kenji Yasuoka , Makoto Asai

We discuss an M-dimensional phantom elastic manifold of linear size L crushed into a small sphere of radius R << L in N-dimensional space. We investigate the low elastic energy states of 2-sheets (M=2) and 3-sheets (M=3) using analytic…

Condensed Matter · Physics 2009-10-28 Eric M. Kramer , Thomas A. Witten

A rectangular plate of dielectric elastomer exhibiting gradients of material properties through its thickness will deform inhomogeneously when a potential difference is applied to compliant electrodes on its major surfaces, because each…

Soft Condensed Matter · Physics 2020-12-08 Yipin Su , Ray W. Ogden , Michel Destrade

At dry and clean material junctions of rigid materials the corrugation of the sliding energy landscape is dominated by variations of Pauli repulsions. These occur when electron clouds centered around atoms in adjacent layers overlap as they…

Chemical Physics · Physics 2016-11-04 Inbal Oz , Itai Leven , Yaron Itkin , Asaf Buchwalter , Katherine Akulov , Oded Hod

The mechanics of single-chain stretching and rupture are central to understanding the resilience of biological polymers and designing strong and tough soft materials such as double-network gels and multi-network elastomers. In this work, we…

Soft Condensed Matter · Physics 2026-05-19 Noy Cohen , Nikolaos Bouklas , Chung-Yuen Hui

We propose a new structured pruning framework for compressing Deep Neural Networks (DNNs) with skip connections, based on measuring the statistical dependency of hidden layers and predicted outputs. The dependence measure defined by the…

Machine Learning · Computer Science 2022-01-28 Mohammadreza Soltani , Suya Wu , Yuerong Li , Jie Ding , Vahid Tarokh

In this paper, we present a 2D numerical model developed to simulate the dynamics of soft, deformable particles. To accommodate significant particle deformations, the particle surface is represented as a narrow shell composed of mass points…

Computational Physics · Physics 2025-04-01 Yohann Trivino , Vincent Richefeu , Farhang Radjai , Komlanvi Lampoh , Jean-Yves Delenne

Liquid crystal elastomers realize a fascinating new form of soft matter that is a composite of a conventional crosslinked polymer gel (rubber) and a liquid crystal. These {\em solid} liquid crystal amalgams, quite similarly to their…

Soft Condensed Matter · Physics 2009-09-29 Xiangjun Xing , Leo Radzihovsky

Molecular dynamics (MD) simulation, which is considered an important tool for studying physical and chemical processes at the atomic scale, requires accurate calculations of energies and forces. Although reliable energies and forces can be…

Materials Science · Physics 2021-12-06 Van-Quyen Nguyen , Viet-Cuong Nguyen , Tien-Cuong Nguyen , Tien-Lam Pham

We study the bending of a book-like system, comprising a stack of elastic plates coupled through friction. The behavior of this layered system is rich and nontrivial, with a non-additive enhancement of the apparent stiffness and a…

Soft Condensed Matter · Physics 2021-06-02 Samuel Poincloux , Tian Chen , Basile Audoly , Pedro Reis

Many organisms have an elastic skeleton that consists of a closed shell of epithelial cells that is filled with fluid, and can actively regulate both elastic forces in the shell and hydrostatic pressure inside it. In this work we introduce…

Soft Condensed Matter · Physics 2023-10-13 Ajoy Maji , Yitzhak Rabin

In vitro reconstituted active systems, such as the ATP-driven microtubule bundle suspension developed by the Dogic group, provide a fertile testing ground for elucidating the phenomenology of active liquid crystalline states. Controlling…

Soft Condensed Matter · Physics 2017-01-04 Pau Guillamat , Jordi Ignés-Mullol , Suraj Shankar , M. Cristina Marchetti , Francesc Sagués

Tissues commonly consist of cells embedded within a fibrous biopolymer network. Whereas cell-free reconstituted biopolymer networks typically soften under applied uniaxial compression, various tissues, including liver, brain, and fat, have…

Polynomial Neural Networks (PNNs) possess a rich algebraic and geometric structure. However, their identifiability -- a key property for ensuring interpretability -- remains poorly understood. In this work, we present a comprehensive…

Machine Learning · Computer Science 2026-02-03 Konstantin Usevich , Ricardo Borsoi , Clara Dérand , Marianne Clausel

We consider a model of a biomembrane with attached proteins. The membrane is represented by a near spherical continuous surface and attached proteins are described as discrete rigid structures which attach to the membrane at a finite number…

Analysis of PDEs · Mathematics 2021-12-14 Charles M. Elliott , Philip J. Herbert
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