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Related papers: Large-scale Augmented Granger Causality (lsAGC) fo…

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Large Language Models (LLMs) excel in language tasks but are prone to hallucinations and outdated knowledge. Retrieval-Augmented Generation (RAG) mitigates these by grounding LLMs in external knowledge. However, in complex domains involving…

Computation and Language · Computer Science 2025-08-28 Peiran Zhou , Junnan Zhu , Yichen Shen , Ruoxi Yu

Granger causality is a commonly used method for uncovering information flow and dependencies in a time series. Here we introduce JGC (Jacobian Granger Causality), a neural network-based approach to Granger causality using the Jacobian as a…

Machine Learning · Computer Science 2022-05-20 Suryadi , Yew-Soon Ong , Lock Yue Chew

Large language models (LLMs) are rapidly transforming various domains, including biomedicine and healthcare, and demonstrate remarkable potential from scientific research to new drug discovery. Graph-based retrieval-augmented generation…

Quantitative Methods · Quantitative Biology 2025-11-14 Guofeng Meng , Li Shen , Qiuyan Zhong , Wei Wang , Haizhou Zhang , Xiaozhen Wang

Retrieval-augmented generation (RAG) has proven effective in integrating knowledge into large language models (LLMs). However, conventional RAGs struggle to capture complex relationships between pieces of knowledge, limiting their…

Information Retrieval · Computer Science 2025-12-12 Linhao Luo , Zicheng Zhao , Gholamreza Haffari , Dinh Phung , Chen Gong , Shirui Pan

Accurate forecasting of blood glucose from CGM is essential for preventing dysglycemic events, thus enabling proactive diabetes management. However, current forecasting models treat blood glucose readings captured using CGMs as a numerical…

Machine Learning · Computer Science 2026-01-12 Shovito Barua Soumma , Hassan Ghasemzadeh

This paper explores the potential of the transformer models for learning Granger causality in networks with complex nonlinear dynamics at every node, as in neurobiological and biophysical networks. Our study primarily focuses on a…

Machine Learning · Computer Science 2025-10-21 Ziyu Lu , Anika Tabassum , Shruti Kulkarni , Lu Mi , J. Nathan Kutz , Eric Shea-Brown , Seung-Hwan Lim

Retrieval-Augmented Generation (RAG) is an advanced technique designed to address the challenges of Artificial Intelligence-Generated Content (AIGC). By integrating context retrieval into content generation, RAG provides reliable and…

Since interactions in neural systems occur across multiple temporal scales, it is likely that information flow will exhibit a multiscale structure, thus requiring a multiscale generalization of classical temporal precedence causality…

Quantitative Methods · Quantitative Biology 2017-07-13 Sebastiano Stramaglia , Iege Bassez , Luca Faes , Daniele Marinazzo

We present a novel extension to Retrieval Augmented Generation with the goal of mitigating factual inaccuracies in the output of large language models. Specifically, our method draws on the cognitive linguistic theory of frame semantics for…

Computation and Language · Computer Science 2024-06-25 Harish Tayyar Madabushi

Retrieval-augmented generation (RAG) has emerged as a promising approach to enhance the performance of large language models (LLMs) in knowledge-intensive tasks such as those from medical domain. However, the sensitive nature of the medical…

Computation and Language · Computer Science 2024-11-15 Nghia Trung Ngo , Chien Van Nguyen , Franck Dernoncourt , Thien Huu Nguyen

The rapid development of next-generation networking technologies underscores their transformative role in revolutionizing modern communication systems, enabling faster, more reliable, and highly interconnected solutions. However, such…

Networking and Internet Architecture · Computer Science 2024-12-11 Yang Xiong , Ruichen Zhang , Yinqiu Liu , Dusit Niyato , Zehui Xiong , Ying-Chang Liang , Shiwen Mao

Recent advancements in integrating speech information into large language models (LLMs) have significantly improved automatic speech recognition (ASR) accuracy. However, existing methods often constrained by the capabilities of the speech…

Sound · Computer Science 2024-09-16 Shaojun Li , Hengchao Shang , Daimeng Wei , Jiaxin Guo , Zongyao Li , Xianghui He , Min Zhang , Hao Yang

Artificial Intelligence (AI) has demonstrated significant potential in healthcare, particularly in disease diagnosis and treatment planning. Recent progress in Medical Large Vision-Language Models (Med-LVLMs) has opened up new possibilities…

Machine Learning · Computer Science 2025-03-04 Peng Xia , Kangyu Zhu , Haoran Li , Tianze Wang , Weijia Shi , Sheng Wang , Linjun Zhang , James Zou , Huaxiu Yao

Retrieval Augmented Generation (RAG), a paradigm that integrates external contextual information with large language models (LLMs) to enhance factual accuracy and relevance, has emerged as a pivotal area in generative AI. The LLMs used in…

Computation and Language · Computer Science 2024-09-17 Xuan-Phi Nguyen , Shrey Pandit , Senthil Purushwalkam , Austin Xu , Hailin Chen , Yifei Ming , Zixuan Ke , Silvio Savarese , Caiming Xong , Shafiq Joty

In recent years, accurately and quickly deploying medical large language models (LLMs) has become a trend. Among these, retrieval-augmented generation (RAG) has garnered attention due to rapid deployment and privacy protection. However, the…

Computation and Language · Computer Science 2025-08-06 Penglei Sun , Yixiang Chen , Xiang Li , Xiaowen Chu

Large Language Models (LLMs) struggle with knowledge-intensive tasks due to hallucinations and fragmented reasoning over dispersed information. While Retrieval-Augmented Generation (RAG) grounds generation in external sources, existing…

Computation and Language · Computer Science 2026-04-14 Cheng-Yen Li , Xuanjun Chen , Claire Lin , Wei-Yu Chen , Wenhua Nie , Hung-Yi Lee , Jyh-Shing Roger Jang

The present study explores the intricacies of causal relationship extraction, a vital component in the pursuit of causality knowledge. Causality is frequently intertwined with temporal elements, as the progression from cause to effect is…

Computation and Language · Computer Science 2023-04-24 Xiaosong Yuan , Ke Chen , Wanli Zuo , Yijia Zhang

Causal discovery from observational data is pivotal for deciphering complex relationships. Causal Structure Learning (CSL), which focuses on deriving causal Directed Acyclic Graphs (DAGs) from data, faces challenges due to vast DAG spaces…

Artificial Intelligence · Computer Science 2023-11-21 Taiyu Ban , Lyuzhou Chen , Derui Lyu , Xiangyu Wang , Huanhuan Chen

Graph Retrieval-Augmented Generation (GraphRAG) enhances factual reasoning in LLMs by structurally modeling knowledge through graph-based representations. However, existing GraphRAG approaches face two core limitations: shallow retrieval…

Computation and Language · Computer Science 2025-10-01 Cehao Yang , Xiaojun Wu , Xueyuan Lin , Chengjin Xu , Xuhui Jiang , Yuanliang Sun , Jia Li , Hui Xiong , Jian Guo

Recently, differentiable causal discovery has emerged as a promising approach to improve the accuracy and efficiency of existing methods. However, when applied to high-dimensional data or data with latent confounders, these methods, often…

Machine Learning · Computer Science 2026-01-12 Pingchuan Ma , Qixin Zhang , Shuai Wang , Dacheng Tao