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Quantitative imaging methods, such as magnetic resonance fingerprinting (MRF), aim to extract interpretable pathology biomarkers by estimating biophysical tissue parameters from signal evolutions. However, the pattern-matching algorithms or…

We consider the task of estimating variational autoencoders (VAEs) when the training data is incomplete. We show that missing data increases the complexity of the model's posterior distribution over the latent variables compared to the…

Machine Learning · Computer Science 2024-06-28 Vaidotas Simkus , Michael U. Gutmann

We propose a new efficient way to sample from a Variational Autoencoder in the challenging low sample size setting. This method reveals particularly well suited to perform data augmentation in such a low data regime and is validated across…

Machine Learning · Statistics 2021-09-29 Clément Chadebec , Stéphanie Allassonnière

Multiple modalities often co-occur when describing natural phenomena. Learning a joint representation of these modalities should yield deeper and more useful representations. Previous generative approaches to multi-modal input either do not…

Machine Learning · Computer Science 2018-11-13 Mike Wu , Noah Goodman

Variational Auto-Encoders (VAEs) are capable of learning latent representations for high dimensional data. However, due to the i.i.d. assumption, VAEs only optimize the singleton variational distributions and fail to account for the…

Machine Learning · Computer Science 2020-04-20 Da Tang , Dawen Liang , Tony Jebara , Nicholas Ruozzi

The key idea of variational auto-encoders (VAEs) resembles that of traditional auto-encoder models in which spatial information is supposed to be explicitly encoded in the latent space. However, the latent variables in VAEs are vectors,…

Machine Learning · Computer Science 2019-01-23 Zhengyang Wang , Hao Yuan , Shuiwang Ji

Representing graph data in a low-dimensional space for subsequent tasks is the purpose of attributed graph embedding. Most existing neural network approaches learn latent representations by minimizing reconstruction errors. Rare work…

Machine Learning · Computer Science 2024-01-15 Bozhen Hu , Zelin Zang , Jun Xia , Lirong Wu , Cheng Tan , Stan Z. Li

Variational Auto-Encoders have often been used for unsupervised pretraining, feature extraction and out-of-distribution and anomaly detection in the medical field. However, VAEs often lack the ability to produce sharp images and learn…

Machine Learning · Computer Science 2019-11-28 David Zimmerer , Jens Petersen , Klaus Maier-Hein

The variational auto-encoder (VAE) is a deep latent variable model that has two neural networks in an autoencoder-like architecture; one of them parameterizes the model's likelihood. Fitting its parameters via maximum likelihood (ML) is…

Machine Learning · Computer Science 2021-06-03 Francisco J. R. Ruiz , Michalis K. Titsias , Taylan Cemgil , Arnaud Doucet

Deep neural networks are powerful tools for biomedical image segmentation. These models are often trained with heavy supervision, relying on pairs of images and corresponding voxel-level labels. However, obtaining segmentations of…

Image and Video Processing · Electrical Eng. & Systems 2020-04-30 Evan M. Yu , Juan Eugenio Iglesias , Adrian V. Dalca , Mert R. Sabuncu

Masked Autoencoder (MAE) has recently been shown to be effective in pre-training Vision Transformers (ViT) for natural image analysis. By reconstructing full images from partially masked inputs, a ViT encoder aggregates contextual…

Image and Video Processing · Electrical Eng. & Systems 2023-04-24 Lei Zhou , Huidong Liu , Joseph Bae , Junjun He , Dimitris Samaras , Prateek Prasanna

Variational AutoEncoders (VAEs) provide a means to generate representational latent embeddings. Previous research has highlighted the benefits of achieving representations that are disentangled, particularly for downstream tasks. However,…

Computer Vision and Pattern Recognition · Computer Science 2019-11-18 Matthew J. Vowels , Necati Cihan Camgoz , Richard Bowden

In this paper, we present a novel approach for training a Variational Autoencoder (VAE) on a highly imbalanced data set. The proposed training of a high-resolution VAE model begins with the training of a low-resolution core model, which can…

Computer Vision and Pattern Recognition · Computer Science 2019-12-19 Dmitry Utyamishev , Inna Partin-Vaisband

Recently there has been an increased interest in unsupervised learning of disentangled representations using the Variational Autoencoder (VAE) framework. Most of the existing work has focused largely on modifying the variational cost…

Machine Learning · Statistics 2019-09-12 Jan Stühmer , Richard E. Turner , Sebastian Nowozin

As deep Variational Auto-Encoder (VAE) frameworks become more widely used for modeling biomolecular simulation data, we emphasize the capability of the VAE architecture to concurrently maximize the timescale of the latent space while…

Chemical Physics · Physics 2021-12-08 Hannah K. Wayment-Steele , Vijay S. Pande

Accelerating the acquisition of magnetic resonance imaging (MRI) is a challenging problem, and many works have been proposed to reconstruct images from undersampled k-space data. However, if the main purpose is to extract certain…

Image and Video Processing · Electrical Eng. & Systems 2019-08-22 Chen Qin , Wenjia Bai , Jo Schlemper , Steffen E. Petersen , Stefan K. Piechnik , Stefan Neubauer , Daniel Rueckert

Semi-supervised learning is attracting increasing attention due to the fact that datasets of many domains lack enough labeled data. Variational Auto-Encoder (VAE), in particular, has demonstrated the benefits of semi-supervised learning.…

Machine Learning · Computer Science 2018-12-04 Yang Li , Quan Pan , Suhang Wang , Haiyun Peng , Tao Yang , Erik Cambria

The variational autoencoder (VAE) can learn the manifold of natural images on certain datasets, as evidenced by meaningful interpolating or extrapolating in the continuous latent space. However, on discrete data such as text, it is unclear…

Computation and Language · Computer Science 2020-08-10 Peng Xu , Jackie Chi Kit Cheung , Yanshuai Cao

Purpose: In multi-spectral imaging (MSI), several fast spin echo volumes with discrete Larmor frequency offsets are acquired in an interleaved fashion with multiple concatenations. Here, a variable resolution (VR) method to nearly halve…

Medical Physics · Physics 2023-06-06 Nikolai J. Mickevicius , Azadeh Sharafi , Andrew S. Nencka , Kevin M. Koch

Variational Autoencoder (VAE) encoders play a critical role in modern generative models, yet their computational cost often motivates the use of knowledge distillation or quantification to obtain compact alternatives. Existing studies…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Jiaming Chu , Tao Wang , Lei Jin
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