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The methodological foundations of the construction of information technology, formalized models and tools for the implementation of the research-related design of smart systems based on the use of the concepts of transdisciplinarity and…

Computers and Society · Computer Science 2022-01-04 Oleksandr Palagin , Mykola Petrenko , Kyrylo Malakhov

As todays world grows with the technology on the other hand it seems to be small with the World Wide Web. With the use of Internet more and more information can be search from the web. When Users fires a query they want relevancy in…

Information Retrieval · Computer Science 2013-11-26 Debajyoti Mukhopadhyay , Sajeeda Shikalgar

Ontologies of research topics are crucial for structuring scientific knowledge, enabling scientists to navigate vast amounts of research, and forming the backbone of intelligent systems such as search engines and recommendation systems.…

Digital Libraries · Computer Science 2025-06-12 Tanay Aggarwal , Angelo Salatino , Francesco Osborne , Enrico Motta

MatNexus is a specialized software for the automated collection, processing, and analysis of text from scientific articles. Through an integrated suite of modules, the MatNexus facilitates the retrieval of scientific articles, processes…

Materials Science · Physics 2024-03-21 Lei Zhang , Markus Stricker

Taxonomies and ontologies of research topics (e.g., MeSH, UMLS, CSO, NLM) play a central role in providing the primary framework through which intelligent systems can explore and interpret the literature. However, these resources have…

Digital Libraries · Computer Science 2025-08-07 Alessia Pisu , Livio Pompianu , Francesco Osborne , Diego Reforgiato Recupero , Daniele Riboni , Angelo Salatino

Ontology engineering (OE) in large projects poses a number of challenges arising from the heterogeneous backgrounds of the various stakeholders, domain experts, and their complex interactions with ontology designers. This multi-party…

The benefit of using ontologies, defined by the respective data standards, is shown. It is presented how ontologies can be used for the semantic enrichment of data and how this can contribute to the vision of the semantic web to become…

Databases · Computer Science 2009-12-16 Gerhard Mayer

Extracting structured information from unstructured text is crucial for modeling real-world processes, but traditional schema mining relies on semi-structured data, limiting scalability. This paper introduces schema-miner, a novel tool that…

Autonomous experimentation systems have been used to greatly advance the integrated computational materials engineering (ICME) paradigm. This paper outlines a framework that enables the design and selection of data collection workflows for…

Materials Science · Physics 2022-06-20 Rohan Casukhela , Sriram Vijayan , Joerg R. Jinschek , Stephen R. Niezgoda

The European Materials and Modelling Ontology (EMMO) is a top-level ontology designed by the European Materials Modelling Council to facilitate semantic interoperability between platforms, models, and tools in computational molecular…

Computational Engineering, Finance, and Science · Computer Science 2020-01-14 Martin Thomas Horsch , Silvia Chiacchiera , Youness Bami , Georg J. Schmitz , Gabriele Mogni , Gerhard Goldbeck , Emanuele Ghedini

Community annotation of biological entities with concepts from multiple bio-ontologies has created large and growing repositories of ontology-based annotation data with embedded implicit relationships among orthogonal ontologies.…

Artificial Intelligence · Computer Science 2016-05-17 Prashanti Manda , Fiona McCarthy , Bindu Nanduri , Hui Wang , Susan M. Bridges

Large, open datasets can accelerate ecological research, particularly by enabling researchers to develop new insights by reusing datasets from multiple sources. However, to find the most suitable datasets to combine and integrate,…

Digital Libraries · Computer Science 2025-10-07 Zehao Lu , Thijs L van der Plas , Parinaz Rashidi , W Daniel Kissling , Ioannis N Athanasiadis

We explore the ability of GPT-4 to perform ad-hoc schema based information extraction from scientific literature. We assess specifically whether it can, with a basic prompting approach, replicate two existing material science datasets,…

Computation and Language · Computer Science 2025-11-18 Satanu Ghosh , Neal R. Brodnik , Carolina Frey , Collin Holgate , Tresa M. Pollock , Samantha Daly , Samuel Carton

In this paper, we describe an approach to populate an existing ontology with instance information present in the natural language text provided as input. An ontology is defined as an explicit conceptualization of a shared domain. This…

Information Retrieval · Computer Science 2013-02-07 Raghu Anantharangachar , Srinivasan Ramani , S Rajagopalan

The advancement of Large Language Models (LLMs) enables flexible and interpretable automatic evaluations. In the field of machine translation evaluation, utilizing LLMs with translation error annotations based on Multidimensional Quality…

Computation and Language · Computer Science 2025-09-17 Shijie Zhang , Renhao Li , Songsheng Wang , Philipp Koehn , Min Yang , Derek F. Wong

We propose an instruction-based process for trustworthy data curation in materials science (MatSci-Instruct), which we then apply to finetune a LLaMa-based language model targeted for materials science (HoneyBee). MatSci-Instruct helps…

Computation and Language · Computer Science 2023-10-13 Yu Song , Santiago Miret , Huan Zhang , Bang Liu

There is an increasing interest in leveraging Large Language Models (LLMs) for managing structured data and enhancing data science processes. Despite the potential benefits, this integration poses significant questions regarding their…

Artificial Intelligence · Computer Science 2023-11-21 Nathalia Nascimento , Cristina Tavares , Paulo Alencar , Donald Cowan

While large language models learn sound statistical representations of the language and information therein, ontologies are symbolic knowledge representations that can complement the former ideally. Research at this critical intersection…

Computation and Language · Computer Science 2024-08-12 Ali Riza Durmaz , Akhil Thomas , Lokesh Mishra , Rachana Niranjan Murthy , Thomas Straub

While machine learning offers diverse techniques suitable for exploring various medical research questions, a cohesive synergistic framework can facilitate the integration and understanding of new approaches within unified model development…

Machine Learning · Computer Science 2025-01-09 Ramtin Zargari Marandi , Anne Svane Frahm , Jens Lundgren , Daniel Dawson Murray , Maja Milojevic

The escalating complexity of modern computing frameworks has resulted in a surge in the cybersecurity vulnerabilities reported to the National Vulnerability Database (NVD) by practitioners. Despite the fact that the stature of NVD is one of…