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Nonnegative matrix factorization (NMF) is a standard linear dimensionality reduction technique for nonnegative data sets. In order to measure the discrepancy between the input data and the low-rank approximation, the Kullback-Leibler (KL)…

Optimization and Control · Mathematics 2021-05-12 Le Thi Khanh Hien , Nicolas Gillis

Non-negative matrix factorization (NMF) is a fundamental non-convex optimization problem with numerous applications in Machine Learning (music analysis, document clustering, speech-source separation etc). Despite having received extensive…

Machine Learning · Computer Science 2020-03-20 Ioannis Panageas , Stratis Skoulakis , Antonios Varvitsiotis , Xiao Wang

We apply the vectorized Non-negative Matrix Factorization (NMF) method to post-processing of direct imaging data for exoplanetary systems such as circumstellar disks. NMF is an iterative approach, which first creates a non-orthogonal and…

Instrumentation and Methods for Astrophysics · Physics 2018-03-20 Bīn Rén , Laurent Pueyo , Guangtun Ben Zhu , John Debes , Gaspard Duchêne

Identifying recurring patterns in high-dimensional time series data is an important problem in many scientific domains. A popular model to achieve this is convolutive nonnegative matrix factorization (CNMF), which extends classic…

Machine Learning · Computer Science 2019-07-02 Anthony Degleris , Ben Antin , Surya Ganguli , Alex H Williams

In this paper, we design a hierarchical clustering algorithm for high-resolution hyperspectral images. At the core of the algorithm, a new rank-two nonnegative matrix factorizations (NMF) algorithm is used to split the clusters, which is…

Computer Vision and Pattern Recognition · Computer Science 2015-02-18 Nicolas Gillis , Da Kuang , Haesun Park

Non-negative matrix factorization (NMF) is widely used for dimensionality reduction and interpretable analysis, but standard formulations are unsupervised and cannot directly exploit class labels. Existing supervised or semi-supervised…

Machine Learning · Computer Science 2025-10-14 Kenichi Satoh

With the advancements in computing technology and web-based applications, data is increasingly generated in multi-dimensional form. This data is usually sparse due to the presence of a large number of users and fewer user interactions. To…

Machine Learning · Computer Science 2020-03-10 Thirunavukarasu Balasubramaniam , Richi Nayak , Chau Yuen

Gaussian processes are widely used for the analysis of spatial data due to their nonparametric flexibility and ability to quantify uncertainty, and recently developed scalable approximations have facilitated application to massive datasets.…

Methodology · Statistics 2021-10-13 F. William Townes , Barbara E. Engelhardt

In this article, we study algorithms for nonnegative matrix factorization (NMF) in various applications involving streaming data. Utilizing the continual nature of the data, we develop a fast two-stage algorithm for highly efficient and…

Optimization and Control · Mathematics 2021-01-22 Ran Gu , Qiang Du , Simon J. L. Billinge

Multiresolution Matrix Factorization (MMF) was recently introduced as an alternative to the dominant low-rank paradigm in order to capture structure in matrices at multiple different scales. Using ideas from multiresolution analysis (MRA),…

Numerical Analysis · Mathematics 2019-10-14 Pramod Kaushik Mudrakarta , Shubhendu Trivedi , Risi Kondor

Symmetric nonnegative matrix factorization has found abundant applications in various domains by providing a symmetric low-rank decomposition of nonnegative matrices. In this paper we propose a Frank-Wolfe (FW) solver to optimize the…

Machine Learning · Computer Science 2018-06-27 Han Zhao , Geoff Gordon

The aim of this study is to provide a foundation to understand the relationship between non-negative matrix factorization (NMF) and non-negative autoencoders enabling proper interpretation and understanding of autoencoder-based alternatives…

Applications · Statistics 2024-05-14 Ida Egendal , Rasmus Froberg Brøndum , Marta Pelizzola , Asger Hobolth , Martin Bøgsted

In the non-negative matrix factorization (NMF) problem, the input is an $m\times n$ matrix $M$ with non-negative entries and the goal is to factorize it as $M\approx AW$. The $m\times k$ matrix $A$ and the $k\times n$ matrix $W$ are both…

Data Structures and Algorithms · Computer Science 2021-03-09 Moses Charikar , Lunjia Hu

Nonnegative Matrix Factorization (NMF) is an important unsupervised learning method to extract meaningful features from data. To address the NMF problem within a polynomial time framework, researchers have introduced a separability…

Machine Learning · Computer Science 2025-01-23 Juefei Chen , Longxiu Huang , Yimin Wei

We introduce a probabilistic model with implicit norm regularization for learning nonnegative matrix factorization (NMF) that is commonly used for predicting missing values and finding hidden patterns in the data, in which the matrix…

Machine Learning · Computer Science 2022-08-23 Jun Lu , Christine P. Chai

Lee and Seung (2000) introduced numerical solutions for non-negative matrix factorization (NMF) using iterative multiplicative update algorithms. These algorithms have been actively utilized as dimensionality reduction tools for…

Numerical Analysis · Mathematics 2025-01-23 Sungjae Cho

Referring back to the original text in the course of hierarchical learning is a common human trait that ensures the right direction of learning. The models developed based on the concept of Non-negative Matrix Factorization (NMF), in this…

Machine Learning · Computer Science 2024-05-24 Prasun Dutta , Rajat K. De

Somatic mutations, or alterations in DNA of a somatic cell, are key markers of cancer. In recent years, mutational signature analysis has become a prominent field of study within cancer research, commonly with Nonnegative Matrix…

Quantitative Methods · Quantitative Biology 2025-07-01 Iris Lang , Jenna Landy , Giovanni Parmigiani

Clustering on the data with multiple aspects, such as multi-view or multi-type relational data, has become popular in recent years due to their wide applicability. The approach using manifold learning with the Non-negative Matrix…

Machine Learning · Computer Science 2020-09-08 Khanh Luong , Richi Nayak

Nonnegative matrix factorization (NMF) is a known unsupervised data-reduction method. The principle of the common cause (PCC) is a basic methodological approach in probabilistic causality, which seeks an independent mixture model for the…

Machine Learning · Computer Science 2025-09-09 E. Khalafyan , A. E. Allahverdyan , A. Hovhannisyan