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Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…

Combinatorics · Mathematics 2017-08-11 Andrew Francis , Charles Semple , Mike Steel

Binary phylogenetic trees inferred from biological data are central to understanding the shared history among evolutionary units. However, inferring the placement of latent nodes in a tree is computationally expensive. State-of-the-art…

Populations and Evolution · Quantitative Biology 2025-03-26 Matthew J Penn , Neil Scheidwasser , Mark P Khurana , David A Duchêne , Christl A Donnelly , Samir Bhatt

In this work, we propose a simple but effective method to interpret black-box machine learning models globally. That is, we use a compact binary tree, the interpretation tree, to explicitly represent the most important decision rules that…

Machine Learning · Computer Science 2018-05-24 Chengliang Yang , Anand Rangarajan , Sanjay Ranka

Systems of decision rules and decision trees are widely used as a means for knowledge representation, as classifiers, and as algorithms. They are among the most interpretable models for classifying and representing knowledge. The study of…

Computational Complexity · Computer Science 2023-02-15 Kerven Durdymyradov , Mikhail Moshkov

The paper proposes a new variant of a decision tree, called an Extreme Learning Tree. It consists of an extremely random tree with non-linear data transformation, and a linear observer that provides predictions based on the leaf index where…

Machine Learning · Computer Science 2019-12-20 Anton Akusok , Emil Eirola , Kaj-Mikael Björk , Amaury Lendasse

We address the problem of representing dynamic graphs using $k^2$-trees. The $k^2$-tree data structure is one of the succinct data structures proposed for representing static graphs, and binary relations in general. It relies on compact…

Data Structures and Algorithms · Computer Science 2019-12-09 Miguel E. Coimbra , Alexandre P. Francisco , Luís M. S. Russo , Guillermo de Bernardo , Susana Ladra , Gonzalo Navarro

While the notion of arboricity of a graph is well-known in graph theory, very few results are dedicated to the minimal number of trees covering the edges of a graph, called the tree number of a graph.

Discrete Mathematics · Computer Science 2020-08-03 Natalia Vanetik

Model trees provide an appealing way to perform interpretable machine learning for both classification and regression problems. In contrast to ``classic'' decision trees with constant values in their leaves, model trees can use linear…

Machine Learning · Computer Science 2026-03-11 Sabino Francesco Roselli , Eibe Frank

We propose a simple model for a binary decision making process on a graph, motivated by modeling social decision making with cooperative individuals. The model is similar to a random field Ising model or fiber bundle model, but with key…

Physics and Society · Physics 2017-01-20 Andrew Lucas , Ching Hua Lee

A data structure, called a biased range tree, is presented that preprocesses a set S of n points in R^2 and a query distribution D for 2-sided orthogonal range counting queries. The expected query time for this data structure, when queries…

Computational Geometry · Computer Science 2008-06-18 Vida Dujmovic , John Howat , Pat Morin

Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…

Populations and Evolution · Quantitative Biology 2018-09-05 Joan Carles Pons , Charles Semple , Mike Steel

A Multinomial Processing Tree (MPT) is a directed tree with a probability associated with each arc. Here we consider an additional parameter associated with each arc, a measure such as the time required to select the arc. MPTs are often…

Applications · Statistics 2020-08-06 Richard Schweickert , Xiaofang Zheng

Model selection consists in comparing several candidate models according to a metric to be optimized. The process often involves a grid search, or such, and cross-validation, which can be time consuming, as well as not providing much…

Machine Learning · Computer Science 2020-06-23 Anthea Mérida Montes de Oca , Argyris Kalogeratos , Mathilde Mougeot

The tree based representation described in this paper, hereditarily binary numbers, applies recursively a run-length compression mechanism that enables computations limited by the structural complexity of their operands rather than by their…

Programming Languages · Computer Science 2013-07-18 Paul Tarau

As computer vision continues to advance and finds widespread applications across various domains, the need for interpretability in deep learning models becomes paramount. Existing methods often resort to post-hoc techniques or prototypes to…

Computer Vision and Pattern Recognition · Computer Science 2024-01-31 Danning Lao , Qi Liu , Jiazi Bu , Junchi Yan , Wei Shen

Decision trees are widely used for classification and regression tasks in a variety of application fields due to their interpretability and good accuracy. During the past decade, growing attention has been devoted to globally optimized…

Machine Learning · Computer Science 2025-01-28 Antonio Consolo , Edoardo Amaldi , Andrea Manno

In an attempt to gather a deeper understanding of how convolutional neural networks (CNNs) reason about human-understandable concepts, we present a method to infer labeled concept data from hidden layer activations and interpret the…

Machine Learning · Computer Science 2019-06-18 Conner Chyung , Michael Tsang , Yan Liu

Following Poupard's study of strictly ordered binary trees with respect to two parameters, namely, "end of minimal chain" and "parent of maximum leaf" a true Tree Calculus is being developed to solve a partial difference equation system and…

Combinatorics · Mathematics 2013-04-10 Dominique Foata , Guo-Niu Han

The use of neural networks for signal vs.~background discrimination in high-energy physics experiment has been investigated and has compared favorably with the efficiency of traditional kinematic cuts. Recent work in top quark…

High Energy Physics - Phenomenology · Physics 2009-10-22 David Bowser-Chao , Debra L. Dzialo

Rooted phylogenetic networks are used to describe evolutionary histories that contain non-treelike evolutionary events such as hybridization and horizontal gene transfer. In some cases, such histories can be described by a phylogenetic…

Populations and Evolution · Quantitative Biology 2016-10-03 Laura Jetten , Leo van Iersel