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Gene annotation has traditionally required direct comparison of DNA sequences between an unknown gene and a database of known ones using string comparison methods. However, these methods do not provide useful information when a gene does…

Machine Learning · Computer Science 2019-09-17 James K. Senter , Taylor M. Royalty , Andrew D. Steen , Amir Sadovnik

This paper studies the completeness of conjunctive queries over a partially complete database and the approximation of incomplete queries. Given a query and a set of completeness rules (a special kind of tuple generating dependencies) that…

Databases · Computer Science 2024-07-31 Julien Corman , Werner Nutt , Ognjen Savković

We investigate the single source shortest distance (SSSD) and all pairs shortest distance (APSD) problems as enumeration problems (on unweighted and integer weighted graphs), meaning that the elements $(u, v, d(u, v))$ -- where $u$ and $v$…

Data Structures and Algorithms · Computer Science 2023-09-19 Katrin Casel , Tobias Friedrich , Stefan Neubert , Markus L. Schmid

Priority queues with parallel access are an attractive data structure for applications like prioritized online scheduling, discrete event simulation, or branch-and-bound. However, a classical priority queue constitutes a severe bottleneck…

Data Structures and Algorithms · Computer Science 2014-11-06 Hamza Rihani , Peter Sanders , Roman Dementiev

We consider the setting of distributed empirical risk minimization where multiple machines compute the gradients in parallel and a centralized server updates the model parameters. In order to reduce the number of communications required to…

Optimization and Control · Mathematics 2020-02-26 Hadrien Hendrikx , Lin Xiao , Sebastien Bubeck , Francis Bach , Laurent Massoulie

We consider the task of lexicographic direct access to query answers. That is, we want to simulate an array containing the answers of a join query sorted in a lexicographic order chosen by the user. A recent dichotomy showed for which…

Databases · Computer Science 2024-12-13 Karl Bringmann , Nofar Carmeli , Stefan Mengel

We give an algorithm to enumerate the results on trees of monadic second-order (MSO) queries represented by nondeterministic tree automata. After linear time preprocessing (in the input tree), we can enumerate answers with linear delay (in…

Databases · Computer Science 2019-08-28 Antoine Amarilli , Pierre Bourhis , Stefan Mengel , Matthias Niewerth

We investigate the query evaluation problem for fixed queries over fully dynamic databases, where tuples can be inserted or deleted. The task is to design a dynamic algorithm that immediately reports the new result of a fixed query after…

Databases · Computer Science 2017-03-01 Christoph Berkholz , Jens Keppeler , Nicole Schweikardt

We propose a versatile approach to lightweight, approximate query processing by creating compact but tunably precise representations of larger quantities of original tuples, coined bubbles. Instead of working with tables of tuples, the…

Databases · Computer Science 2022-12-21 Damjan Gjurovski , Sebastian Michel

We study which property testing and sublinear time algorithms can be transformed into graph streaming algorithms for random order streams. Our main result is that for bounded degree graphs, any property that is constant-query testable in…

Data Structures and Algorithms · Computer Science 2017-07-25 Morteza Monemizadeh , S. Muthukrishnan , Pan Peng , Christian Sohler

In the dictionary learning (or sparse coding) problem, we are given a collection of signals (vectors in $\mathbb{R}^d$), and the goal is to find a "basis" in which the signals have a sparse (approximate) representation. The problem has…

Machine Learning · Computer Science 2019-05-30 Aditya Bhaskara , Wai Ming Tai

We develop diffusion approximations for parallel-queueing systems with the randomized longest-queue-first scheduling algorithm by establishing new mean-field limit theorems as the number of buffers $n\to\infty$. We achieve this by allowing…

Probability · Mathematics 2014-10-10 A. B. Dieker , Tonghoon Suk

We study the problem of efficiently clustering protein sequences in a limited information setting. We assume that we do not know the distances between the sequences in advance, and must query them during the execution of the algorithm. Our…

Data Structures and Algorithms · Computer Science 2015-03-17 Konstantin Voevodski , Maria-Florina Balcan , Heiko Roglin , Shang-Hua Teng , Yu Xia

In this paper, we introduce a method for approximating the solution to inference and optimization tasks in uncertain and deterministic reasoning. Such tasks are in general intractable for exact algorithms because of the large number of…

Artificial Intelligence · Computer Science 2012-12-12 David Ephraim Larkin

We investigate the scheduling of $n$ jobs divided into $c$ classes on $m$ identical parallel machines. For every class there is a setup time which is required whenever a machine switches from the processing of one class to another class.…

Data Structures and Algorithms · Computer Science 2019-05-02 Max A. Deppert , Klaus Jansen

The notion of bounded expansion captures uniform sparsity of graph classes and renders various algorithmic problems that are hard in general tractable. In particular, the model-checking problem for first-order logic is fixed-parameter…

Information processing techniques based on sparseness have been actively studied in several disciplines. Among them, a mathematical framework to approximately express a given dataset by a combination of a small number of basis vectors of an…

Information Theory · Computer Science 2016-05-04 Tomoyuki Obuchi , Yoshiyuki Kabashima

Due to the falling costs of data acquisition and storage, researchers and industry analysts often want to find all instances of rare events in large datasets. For instance, scientists can cheaply capture thousands of hours of video, but are…

Databases · Computer Science 2022-01-05 Daniel Kang , Edward Gan , Peter Bailis , Tatsunori Hashimoto , Matei Zaharia

Quantifying the semantic similarity between database queries is a critical challenge with broad applications, ranging from query log analysis to automated educational assessment of SQL skills. Traditional methods often rely solely on…

Databases · Computer Science 2025-03-11 Leo Köberlein , Dominik Probst , Richard Lenz

Information extraction from textual data, where the query is represented by a finite transducer and the task is to enumerate all results without repetition, and its extension to the weighted case, where each output element has a weight and…

Data Structures and Algorithms · Computer Science 2024-10-08 Pawel Gawrychowski , Florin Manea , Markus L. Schmid
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