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We introduce the package PhylogeneticTrees for Macaulay2 which allows users to compute phylogenetic invariants for group-based tree models. We provide some background information on phylogenetic algebraic geometry and show how the package…

Populations and Evolution · Quantitative Biology 2021-01-27 Hector Baños , Nathaniel Bushek , Ruth Davidson , Elizabeth Gross , Pamela E. Harris , Robert Krone , Colby Long , Allen Stewart , Robert Walker

For a rational function of several variables with nonnegative imaginary part on the upper poly-half-plane, the matrix representations are obtained.

Complex Variables · Mathematics 2021-11-30 M. F. Bessmertnyi

We present the $\textit{NumericalImplicitization}$ package for $\textit{Macaulay2}$, which allows for user-friendly computation of the invariants of the image of a polynomial map, such as dimension, degree, and Hilbert function values. This…

Algebraic Geometry · Mathematics 2019-10-16 Justin Chen , Joe Kileel

We introduce a new Macaulay 2 package, SimplicialDecomposability, which works in conjunction with the extant package SimplicialComplexes in order to compute a shelling order, if one exists, of a specified simplicial complex. Further,…

Combinatorics · Mathematics 2010-08-23 David Cook

The Macaulay2 package DecomposableSparseSystems implements methods for studying and numerically solving decomposable sparse polynomial systems. We describe the structure of decomposable sparse systems and explain how the methods in this…

Algebraic Geometry · Mathematics 2021-07-21 Taylor Brysiewicz , Jose Israel Rodriguez , Frank Sottile , Thomas Yahl

Recently continuous rational maps between real algebraic varieties have attracted the attention of several researchers. In this paper we continue the investigation of approximation properties of continuous rational maps with values in…

Algebraic Geometry · Mathematics 2015-12-21 Wojciech Kucharz , Krzysztof Kurdyka

We present a package to perform partial fraction decompositions of multivariate rational functions. The algorithm allows to systematically avoid spurious denominator factors and is capable of producing unique results also when being applied…

Symbolic Computation · Computer Science 2022-01-05 Matthias Heller , Andreas von Manteuffel

This introduces Rees algebras and some of their uses with illustrations via version 2.0 of the Macaulay2 package ReesAlgebra.m2.

Commutative Algebra · Mathematics 2017-09-05 David Eisenbud

A rational map between certain specific threefolds is given in an explicit manner.

Algebraic Geometry · Mathematics 2007-05-23 Kenichiro Kimura

\pkg{multiplex} is a computer program that provides algebraic tools for the analysis of multiple network structures within the \proglang{R} environment. Apart from the possibility to create and manipulate multivariate data representing…

Social and Information Networks · Computer Science 2022-01-31 J Antonio Rivero Ostoic

The NumericalHilbert package for Macaulay2 includes algorithms for computing local dual spaces of polynomial ideals, and related local combinatorial data about its scheme structure. These techniques are numerically stable, and can be used…

Commutative Algebra · Mathematics 2014-05-22 Robert Krone

We provide an overview of the Macaulay2 package VersalDeformations, which algorithmically computes versal deformations of isolated singularities, as well as local (multi)graded Hilbert schemes.

Algebraic Geometry · Mathematics 2019-11-26 Nathan Owen Ilten

Multivalued projections are applied to the study of weighted least squares solutions of linear relations equations (or inclusions) and some of its applications. To this end a matrix representation of multivalued projections with respect to…

Functional Analysis · Mathematics 2023-01-31 Maria Laura Arias , Maximiliano Contino , Alejandra Maestripieri , Stefania Marcantognini

We present the Matlab toolbox MacaulayLab, which implements numerical linear algebra algorithms for solving multivariate polynomial systems and rectangular multiparameter eigenvalue problems. Its structure and functionality are the result…

Mathematical Software · Computer Science 2026-05-21 Christof Vermeersch , Bart De Moor

The Macaulay2 package PHCpack.m2 provides an interface to PHCpack, a general-purpose polynomial system solver that uses homotopy continuation. The main method is a numerical blackbox solver which is implemented for all Laurent systems. The…

Algebraic Geometry · Mathematics 2012-10-11 Elizabeth Gross , Sonja Petrović , Jan Verschelde

We give a new method for calculating the cohomology of the normal bundles over rational varieties which are smooth projections of Veronese embeddings. The method can be used also when the projections are not smooth, in this case it provides…

Algebraic Geometry · Mathematics 2020-03-06 Alberto Alzati , Riccardo Re

The goal of this paper is to introduce a new constructive geometric proof of the affine version of Chevalley's Theorem. This proof is algorithmic and a verbatim implementation resulted in an efficient code for computing the constructible…

Algebraic Geometry · Mathematics 2022-01-14 Mohamed Barakat , Markus Lange-Hegermann

We describe the package "IncidenceCorrespondenceCohomology" for the computer algebra system Macaulay2. The main feature concerns the computation of characters and dimensions for the cohomology groups of line bundles on the incidence…

Algebraic Geometry · Mathematics 2025-03-25 Annet Kyomuhangi , Emanuela Marangone , Claudiu Raicu , Ethan Reed

In this paper, we consider rational maps whose source is a product of two subvarieties, each one being embedded in a projective space. Our main objective is to investigate birationality criteria for such maps. First, a general criterion is…

Commutative Algebra · Mathematics 2016-02-25 Nicolás Botbol , Laurent Busé , Marc Chardin , Seyed Hamid Hassanzadeh , Aron Simis , Quang Hoa Tran

In this paper, we explore the interaction between two monoidal structures: a multiplicative one, for the encoding of pairing, and an additive one, for the encoding of choice. We propose a colored PROP to model computation in this framework,…

Logic in Computer Science · Computer Science 2025-05-21 Kostia Chardonnet , Marc de Visme , Benoît Valiron , Renaud Vilmart