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The alignment of serial-section electron microscopy (ssEM) images is critical for efforts in neuroscience that seek to reconstruct neuronal circuits. However, each ssEM plane contains densely packed structures that vary from one section to…

Computer Vision and Pattern Recognition · Computer Science 2017-12-06 Inwan Yoo , David G. C. Hildebrand , Willie F. Tobin , Wei-Chung Allen Lee , Won-Ki Jeong

Deep learning techniques have shown great potential in medical image processing, particularly through accurate and reliable image segmentation on magnetic resonance imaging (MRI) scans or computed tomography (CT) scans, which allow the…

Image and Video Processing · Electrical Eng. & Systems 2022-05-10 Yang Liu , Ersi Zhang , Lulu Xu , Chufan Xiao , Xiaoyun Zhong , Lijin Lian , Fang Li , Bin Jiang , Yuhan Dong , Lan Ma , Qiming Huang , Ming Xu , Yongbing Zhang , Dongmei Yu , Chenggang Yan , Peiwu Qin

We describe a deep learning based method for estimating 3D facial expression coefficients. Unlike previous work, our process does not relay on facial landmark detection methods as a proxy step. Recent methods have shown that a CNN can be…

Computer Vision and Pattern Recognition · Computer Science 2018-02-05 Feng-Ju Chang , Anh Tuan Tran , Tal Hassner , Iacopo Masi , Ram Nevatia , Gerard Medioni

Background and Aim: Accurate classification of Magnetic Resonance Images (MRI) is essential to accurately predict Mild Cognitive Impairment (MCI) to Alzheimer's Disease (AD) conversion. Meanwhile, deep learning has been successfully…

Computer Vision and Pattern Recognition · Computer Science 2021-09-03 Kshitiz Shrestha , Omar Hisham Alsadoon , Abeer Alsadoon , Tarik A. Rashid , Rasha S. Ali , P. W. C. Prasad , Oday D. Jerew

Deep cerebellar nuclei are a key structure of the cerebellum that are involved in processing motor and sensory information. It is thus a crucial step to accurately segment deep cerebellar nuclei for the understanding of the cerebellum…

Image and Video Processing · Electrical Eng. & Systems 2020-06-02 Jinyoung Kim , Remi Patriat , Jordan Kaplan , Oren Solomon , Noam Harel

Although deep encoder-decoder networks have achieved astonishing performance for mitochondria segmentation from electron microscopy (EM) images, they still produce coarse segmentations with lots of discontinuities and false positives.…

Computer Vision and Pattern Recognition · Computer Science 2020-01-30 Zhimin Yuan , Jiajin Yi , Zhengrong Luo , Zhongdao Jia , Jialin Peng

Recent advancements in Contrastive Language-Image Pre-training (CLIP) have demonstrated notable success in self-supervised representation learning across various tasks. However, the existing CLIP-like approaches often demand extensive GPU…

Computer Vision and Pattern Recognition · Computer Science 2024-07-31 Yuexi Du , Brian Chang , Nicha C. Dvornek

Semantic segmentation has been a hot topic across diverse research fields. Along with the success of deep convolutional neural networks, semantic segmentation has made great achievements and improvements, in terms of both urban scene…

Computer Vision and Pattern Recognition · Computer Science 2019-06-28 Xianwei Zheng , Linxi Huan , Hanjiang Xiong , Jianya Gong

Semi-supervised learning has received a lot of recent attention as it alleviates the need for large amounts of labelled data which can often be expensive, requires expert knowledge and be time consuming to collect. Recent developments in…

Machine Learning · Computer Science 2022-09-30 Philip Sellars , Angelica I. Aviles-Rivero , Carola-Bibiane Schönlieb

Different from the general visual classification, some classification tasks are more challenging as they need the professional categories of the images. In the paper, we call them expert-level classification. Previous fine-grained vision…

Computer Vision and Pattern Recognition · Computer Science 2022-11-30 Junde Wu , Huihui Fang , Yehui Yang , Yu Zhang , Haoyi Xiong , Huazhu Fu , Yanwu Xu

Neural circuit reconstruction at single synapse resolution is increasingly recognized as crucially important to decipher the function of biological nervous systems. Volume electron microscopy in serial transmission or scanning mode has been…

Computer Vision and Pattern Recognition · Computer Science 2018-05-09 Larissa Heinrich , Jan Funke , Constantin Pape , Juan Nunez-Iglesias , Stephan Saalfeld

Accurate lumbar spine segmentation is crucial for diagnosing spinal disorders. Existing methods typically use coarse-grained segmentation strategies that lack the fine detail needed for precise diagnosis. Additionally, their reliance on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-24 Sheng Lian , Jianlong Cai , Dengfeng Pan , Guang-Yong Chen , Hao Xu , Fan Zhang , Guodong Fan , Shuo Li

Connectomics aims to recover a complete set of synaptic connections within a dataset imaged by volume electron microscopy. Many systems have been proposed for locating synapses, and recent research has included a way to identify the…

Computer Vision and Pattern Recognition · Computer Science 2019-11-25 Nicholas Turner , Kisuk Lee , Ran Lu , Jingpeng Wu , Dodam Ih , H. Sebastian Seung

The rapid increment of morbidity of brain stroke in the last few years have been a driving force towards fast and accurate segmentation of stroke lesions from brain MRI images. With the recent development of deep-learning, computer-aided…

Image and Video Processing · Electrical Eng. & Systems 2021-10-25 Hritam Basak , Rukhshanda Hussain , Ajay Rana

The emerging field of connectomics aims to unlock the mysteries of the brain by understanding the connectivity between neurons. To map this connectivity, we acquire thousands of electron microscopy (EM) images with nanometer-scale…

Quantitative Methods · Quantitative Biology 2016-04-04 Stephen M. Plaza , Stuart E. Berg

Convolution Neural Networks (CNN) have performed well in many applications such as object detection, pattern recognition, video surveillance and so on. CNN carryout feature extraction on labelled data to perform classification. Multi-label…

Machine Learning · Computer Science 2021-01-28 Tolulope A. Odetola , Ogheneuriri Oderhohwo , Syed Rafay Hasan

We study the problem of large scale, multi-label visual recognition with a large number of possible classes. We propose a method for augmenting a trained neural network classifier with auxiliary capacity in a manner designed to…

Machine Learning · Statistics 2015-04-15 David Warde-Farley , Andrew Rabinovich , Dragomir Anguelov

Diagnosis and treatment management for head and neck squamous cell carcinoma (HNSCC) is guided by routine diagnostic head and neck computed tomography (CT) scans to identify tumor and lymph node features. Extracapsular extension (ECE) is a…

Image and Video Processing · Electrical Eng. & Systems 2025-09-12 Yibin Wang , Abdur Rahman , W. Neil. Duggar , P. Russell Roberts , Toms V. Thomas , Linkan Bian , Haifeng Wang

Accurate medical image segmentation is essential for diagnosis and treatment planning of diseases. Convolutional Neural Networks (CNNs) have achieved state-of-the-art performance for automatic medical image segmentation. However, they are…

Image and Video Processing · Electrical Eng. & Systems 2020-11-05 Ran Gu , Guotai Wang , Tao Song , Rui Huang , Michael Aertsen , Jan Deprest , Sébastien Ourselin , Tom Vercauteren , Shaoting Zhang

Nowadays U-net-like FCNs predominate various biomedical image segmentation applications and attain promising performance, largely due to their elegant architectures, e.g., symmetric contracting and expansive paths as well as lateral…

Computer Vision and Pattern Recognition · Computer Science 2019-09-11 Yanhao Zhu , Zhineng Chen , Shuai Zhao , Hongtao Xie , Wenming Guo , Yongdong Zhang