English
Related papers

Related papers: Active Particles in Explicit Solvent: Dynamics of …

200 papers

The self-organization of clusters of particles is a fundamental phenomenon across various physical systems, including hydrodynamic and colloidal systems. One example is that of dense spherical particles submerged in a fluid and subjected to…

Soft Condensed Matter · Physics 2024-06-17 T. J. J. M. van Overveld , W. G. Ellenbroek , J. M. Meijer , H. J. H. Clercx , M. Duran-Matute

Droplets form a cornerstone of the spatiotemporal organization of biomolecules in cells. These droplets are controlled using physical processes like chemical reactions and imposed gradients, which are costly to simulate using traditional…

Soft Condensed Matter · Physics 2022-06-23 Ajinkya Kulkarni , Estefania Vidal-Henriquez , David Zwicker

The mechanism of hydrodynamics-induced pairing of soft particles, namely closed bilayer membranes (vesicles, a model system for red blood cells) and drops, is studied numerically with a special attention paid to the role of the confinement…

One standard approach to describe the collective behaviour of self-propelled particles is the Vicsek model: point-like self-propelled particles tend to align their migration directions to the ones of their nearer neighbours at each…

Soft Condensed Matter · Physics 2013-11-27 Andreas M. Menzel

Collective behavior of self-propelled particles is observed on a microscale for swimmers such as sperm and bacteria as well as for protein filaments in motility assays. The properties of such systems depend both on their dimensionality and…

Soft Condensed Matter · Physics 2014-01-07 Masoud Abkenar , Kristian Marx , Thorsten Auth , Gerhard Gompper

Active turbulence is a paradigmatic and fascinating example of self-organized motion at large scales occurring in active matter. We employ massive hydrodynamic simulations of suspensions of resolved model microswimmers to tackle the…

Soft Condensed Matter · Physics 2025-03-18 Antonio Gascó , Ignacio Pagonabarraga , Andrea Scagliarini

Understanding how microscopic motility shapes emergent collective behaviors is a challenging task in active matter, especially when self-propulsion is regulated by external cues or via quorum-sensing interactions. To address this problem,…

Statistical Mechanics · Physics 2026-04-13 Alberto Dinelli , Pietro Luigi Muzzeddu

Active matter systems may be characterised by the conversion of energy into active motion, e.g. the self-propulsion of microorganisms. Artificial active colloids form models which exhibit essential properties of more complex biological…

Soft Condensed Matter · Physics 2021-07-19 Abraham Mauleon-Amieva , Michael P. Allen , C. Patrick Royall

Active matter comprised of many self-driven units can exhibit emergent collective behaviors such as pattern formation and phase separation in both biologica and synthetic systems. While these behaviors are increasingly well understood for…

Soft Condensed Matter · Physics 2015-07-27 Syeda Sabrina , Matthew Spellings , Sharon C. Glotzer , Kyle J. M. Bishop

We present an efficient method to perform overdamped Brownian dynamics simulations in external force fields and for particle interactions that include a hardcore part. The method applies to particle motion in one dimension, where it is…

Statistical Mechanics · Physics 2026-02-23 Alexander P. Antonov , Sören Schweers , Artem Ryabov , Philipp Maass

Hydrodynamic interactions can generate rich emergent structures in active matter systems. Using large-scale hydrodynamic simulations, we demonstrate that hydrodynamic coupling alone can drive spontaneous self-organization across a hierarchy…

Soft Condensed Matter · Physics 2025-11-17 Zaiyi Shen , Leilei Wang , Shishuang Zhang , Chenlu Li , Kaili Xie , Xu Zheng , Juho S. Lintuvuori

In this work, we investigate the dynamics of interacting particle systems subjected to repulsive forces, such as lattices of magnetized particles. To this end, we first develop a general model capable of capturing the complete dynamical…

Applied Physics · Physics 2021-03-22 Weijian Jiao , Stefano Gonella

Colloidal particles moving in a fluid interact via the induced velocity field. The collective dynamic state for a class of actively forced colloids, driven by harmonic potentials via a rule that couples forces to configurations, to perform…

Soft Condensed Matter · Physics 2011-10-11 Loïc Damet , Giovanni M. Cicuta , Jurij Kotar , Marco Cosentino Lagomarsino , Pietro Cicuta

Via molecular dynamics simulation with Langevin thermostat we study the structure and dynamics of a flexible bead-spring active polymer model after a quench from good to poor solvent conditions. The self propulsion is introduced via a…

Soft Condensed Matter · Physics 2021-03-18 Subhajit Paul , Suman Majumder , Wolfhard Janke

Discrete simulation methods are efficient tools to investigate the complex behaviors of complex fluids made of either dry granular materials or dilute suspensions. By contrast, materials made of soft and/or concentrated units (emulsions,…

Fluid Dynamics · Physics 2008-12-18 Pierre Rognon , Cyprien Gay

We theoretically describe the dynamics of swimmer populations confined in thin liquid films. We first demonstrate that hydrodynamic interactions between confined swimmers only depend on their shape and are independent of their specific…

Soft Condensed Matter · Physics 2015-06-11 Tommaso Brotto , Jean-Baptiste Caussin , Eric Lauga , Denis Bartolo

A continuum model for self-organized dynamics is numerically investigated. The model describes systems of particles subject to alignment interaction and short-range repulsion. It consists of a non-conservative hyperbolic system for the…

Mathematical Physics · Physics 2015-06-05 Pierre Degond , Jiale Hua

Dynamics of various biological filaments can be understood within the framework of active polymer models. Here we consider a bead-spring model for a flexible polymer chain in which the active interaction among the beads is introduced via an…

Soft Condensed Matter · Physics 2021-08-03 Subhajit Paul , Suman Majumder , Subir K Das , Wolfhard Janke

In many natural and industrial applications, turbulent flows encompass some form of dispersed particles. Although this type of multiphase turbulent flow is omnipresent, its numerical modeling has proven to be a remarkably challenging…

Fluid Dynamics · Physics 2024-07-02 Xander M. de Wit , Rudie P. J. Kunnen , Herman J. H. Clercx , Federico Toschi

Self-diffusiophoretic particles exploit local concentration gradients of a solute species in order to self-propel at the micron scale. While an isolated chemically- and geometrically-isotropic particle cannot swim, we show that it can…

Soft Condensed Matter · Physics 2018-06-12 Akhil Varma , Thomas D. Montenegro-Johnson , Sebastien Michelin