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We use coarse-grained molecular dynamics simulations to study the motility of a 2D vesicle containing self-propelled rods, as a function of the vesicle bending rigidity and the number density, length, and activity of the enclosed rods.…

Soft Condensed Matter · Physics 2023-03-29 Sarvesh Uplap , Michael F. Hagan , Aparna Baskaran

A simple model for simulating flows of active suspensions is investigated. The approach is based on dissipative particle dynamics. While the model is potentially applicable to a wide range of self-propelled particle systems, the specific…

Fluid Dynamics · Physics 2015-10-08 Denis F. Hinz , Alexander Panchenko , Tae-Yeon Kim , Eliot Fried

In conflict with standard notions of thermodynamics, mesoscopically-sized inclusions (``clusters'') of a solute-rich liquid have been observed in equilibrated solutions of proteins and other molecules. According to a complexation scenario…

Soft Condensed Matter · Physics 2025-09-11 Ilya Davydov , Vassiliy Lubchenko

The conformational and dynamical properties of active self-propelled filaments/polymers are investigated in the presence of hydrodynamic interactions by both, Brownian dynamics simulations and analytical theory. Numerically, a discrete…

Soft Condensed Matter · Physics 2020-08-04 Aitor Martin-Gomez , Thomas Eisenstecken , Gerhard Gompper , Roland G. Winkler

We expand on a recent study of a lattice model of interacting particles [Phys. Rev. Lett. 111, 110601 (2013)]. The adsorption isotherm and equilibrium fluctuations in particle number are discussed as a function of the interaction. Their…

Statistical Mechanics · Physics 2014-11-20 T. Becker , K. Nelissen , B. Cleuren , B. Partoens , C. Van den Broeck

The spatiotemporal dynamics in systems of active self-propelled particles is controlled by the propulsion mechanism in combination with various direct interactions, such as steric repulsion, hydrodynamics, and chemical fields. Yet, these…

Soft Condensed Matter · Physics 2024-06-03 Mario Theers , Elmar Westphal , Kai Qi , Roland G. Winkler , Gerhard Gompper

We use a combination of unsupervised clustering and sparsity-promoting inference algorithms to learn locally dominant force balances that explain macroscopic pattern formation in self-organized active particle systems. The self-organized…

Soft Condensed Matter · Physics 2023-07-28 Dominik Sturm , Suryanarayana Maddu , Ivo F. Sbalzarini

Inert particles suspended in active fluids of self-propelled particles are known to often exhibit enhanced diffusion and novel coherent structures. Here we numerically investigate the dynamical behavior and self-organization in a system…

Soft Condensed Matter · Physics 2016-07-04 Kyongmin Yeo , Enkeleida Lushi , Petia M. Vlahovska

A continuum model for a population of self-propelled particles interacting through nematic alignment is derived from an individual-based model. The methodology consists of introducing a hydrodynamic scaling of the corresponding mean-field…

Analysis of PDEs · Mathematics 2015-09-11 Pierre Degond , Angelika Manhart , Hui Yu

We propose a method for quantifying charge-driven instabilities in clusters, based on equilibrium simulations under confinement at constant external pressure. This approach makes no assumptions about the mode of decay and allows different…

Atomic and Molecular Clusters · Physics 2015-10-28 Mark A. Miller , David A. Bonhommeau , Christian P. Moerland , Sarah J. Gray , Marie-Pierre Gaigeot

Taking into account simultaneously the Vicsek short range ordering and also the far-field hydrodynamic interactions mediated by the ambient fluid, we investigate the role of long range interactions in the ordering phenomena in a quasi…

Biological Physics · Physics 2017-03-08 Hojjat Behmadi , Zahra Fazli , Ali Najafi

We study the hydrodynamic properties of ultraclean interacting two-dimensional Dirac electrons with Keldysh quantum field theory. We study it from a weak-coupling and a strong-coupling perspective. We demonstrate that long-range Coulomb…

Strongly Correlated Electrons · Physics 2022-06-22 Kitinan Pongsangangan , T. Ludwig , H. T. C. Stoof , Lars Fritz

Kinetic and hydrodynamic theories are widely employed for describing the collective behaviour of active matter systems. At the fluctuating level, these have been obtained from explicit coarse-graining procedures in the limit where each…

Statistical Mechanics · Physics 2022-12-14 Ouassim Feliachi , Marc Besse , Cesare Nardini , Julien Barré

In equilibrium, colloidal suspensions governed by short-range attractive and long-range repulsive interactions form thermodynamically stable clusters. Using Brownian dynamics computer simulations, we investigate how this equilibrium…

Soft Condensed Matter · Physics 2015-09-30 Ethayaraja Mani , Hartmut Löwen

In active matter systems, self-propelled particles can self-organize to undergo collective motion, leading to persistent dynamical behavior out of equilibrium. In cells, cytoskeletal filaments and motor proteins self-organize into complex…

Soft Condensed Matter · Physics 2020-05-19 Jeffrey M. Moore , Tyler N. Thompson , Matthew A. Glaser , Meredith D. Betterton

Several methods in nonadiabatic molecular dynamics are based on Madelung's hydrodynamic description of nuclear motion, while the electronic component is treated as a finite-dimensional quantum system. In this context, the quantum potential…

Mathematical Physics · Physics 2024-06-04 François Gay-Balmaz , Cesare Tronci

Dynamic processes in dispersions of charged spherical particles are of importance both in fundamental science, and in technical and bio-medical applications. There exists a large variety of charged-particles systems, ranging from…

Soft Condensed Matter · Physics 2013-11-25 G. Nägele , M. Heinen , A. J. Banchio , C. Contreras-Aburto

To describe many-particle systems suspended in incompressible low-Reynolds-number fluids, effective hydrodynamic interactions can be introduced. Here, we consider particles embedded in elastic media. The effective elastic interactions…

Soft Condensed Matter · Physics 2017-02-07 Mate Puljiz , Shilin Huang , Günter K. Auernhammer , Andreas M. Menzel

We study the collective motion of confined spherical microswimmers such as active colloids which we model by so-called squirmers. To simulate hydrodynamic flow fields including thermal noise, we use the method of multi-particle collision…

Soft Condensed Matter · Physics 2014-03-20 Andreas Zöttl , Holger Stark

Recent experiments have shown that colloidal suspensions can spontaneously self-assemble into dense clusters of various internal structures, sizes and dynamical properties when doped with active Janus particles. Characteristically, these…

Soft Condensed Matter · Physics 2020-01-29 Frederik Hauke , Hartmut Löwen , Benno Liebchen
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