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Bacteria on surfaces exhibit collective behaviors, such as active turbulence and active stresses, which result from their motility, growth, and interactions with their local surroundings. However, interfacial deformations on soft surfaces…

Soft Condensed Matter · Physics 2022-09-13 Vincent Hickl , Gabriel Juarez

The self-assembly of polyhedral shells, each constructed from 60 trapezoidal particles, is simulated using molecular dynamics. The spatial organization of the component particles in this shell is similar to the capsomer proteins forming the…

Soft Condensed Matter · Physics 2012-12-05 D. C. Rapaport

The elastic property of membranes self-assembled from AB diblock and ABA triblock copolymers, as coarse-grained model of lipids and the bolalipids, are studied using the self-consistent field theory (SCFT). Specifically, solutions of the…

Soft Condensed Matter · Physics 2019-05-17 Rui Xu , Ashkan Dehghan , An-Chang Shi , Jiajia Zhou

The new linear theory of elastic shells is presented in this paper. This theory is free from various logical imperfections, that may be found in the approaches of earlier researchers. On the base of this theory the equations of shells of…

Mathematical Physics · Physics 2007-05-23 Vladimir V. Eliseev , Alexey S. Skoblikov

We use highly resolved numerical simulations to study turbulent Rayleigh-B\'enard convection in a cell with sinusoidally rough upper and lower surfaces in two dimensions for $Pr = 1$ and $Ra = \left[4 \times 10^6, 3 \times 10^9\right]$. By…

Fluid Dynamics · Physics 2017-03-08 Srikanth Toppaladoddi , Sauro Succi , John S. Wettlaufer

Cavitation and bubble dynamics are central concepts in engineering, the natural sciences, and the mathematics of fluid mechanics. Due to the nonlinear nature of their dynamics, the governing equations are not fully solvable. Here, the…

Fluid Dynamics · Physics 2014-10-15 Alexander R. Klotz

We report forced radial imbibition of water in a porous medium in a Hele-Shaw cell. Washburn's law is confirmed in our experiment. Radial imbibition follows scaling dynamics and shows anomalous roughening dynamics when the front invades the…

Fluid Dynamics · Physics 2015-03-16 Yong-Jun Chen , Shun Watanabe , Kenichi Yoshikawa

The elastic properties of two-component bilayer membranes are studied using a coarse grain model for amphiphilic molecules. The two species of amphiphiles considered here differ only in their length. Molecular Dynamics simulations are…

Soft Condensed Matter · Physics 2007-05-23 Alberto Imparato , Julian C. Shillcock , Reinhard Lipowsky

We model the formation and evolution of wrinkles in a floating elastic sheet under uniaxial compression. This is a canonical setup in the study of wrinkling, and whilst its static equilibrium configuration is well characterised, its…

Fluid Dynamics · Physics 2025-10-31 Daniel J. Netherwood , Ben S. Humphries , Connor Robbins , Doireann O'Kiely

We propose a model to describe an evolution of a bubble cluster with rupture. In a special case, the equation is reduced to a single parabolic equation with evaporation for the thickness of a liquid layer covering bubbles. We postulate that…

Analysis of PDEs · Mathematics 2023-08-10 Yoshikazu Giga , Yuki Ueda

A simple model of an active colloid consisting of dumbbell-shaped particles that cyclically change their length without propelling themselves is proposed and analyzed. At nanoscales, it represents an idealization for bacterial cytoplasm or…

Adaptation and Self-Organizing Systems · Physics 2020-01-28 Yuki Koyano , Hiroyuki Kitahata , Alexander S. Mikhailov

Rayleigh-Benard convection in a cylindrical container can take on many different spatial forms. Motivated by the results of Hof, Lucas and Mullin [Phys. Fluids 11, 2815 (1999)], who observed coexistence of several stable states at a single…

Fluid Dynamics · Physics 2010-04-02 Katarayna Borońska , Laurette S. Tuckerman

Wrinkling of an inextensible elastic lining of an inner-lined tube under imposed pressure is considered. A simple equation modeling the elastic properties of the lining, the pressure, and the soft-substrate forces is derived. This equation…

Soft Condensed Matter · Physics 2022-01-20 Benjamin Foster , Nicolás Verschueren , Edgar Knobloch , Leonardo Gordillo

Microgels are soft colloidal particles that, when dispersed in a solvent, swell and deswell in response to changes in environmental conditions, such as temperature, concentration, and $p$H. Using Monte Carlo simulation, we model bulk…

Soft Condensed Matter · Physics 2016-11-10 Matthew Urich , Alan R. Denton

The cellular uptake of self-propelled nanoparticles (NPs) or viruses, usually nonspherical, by cell membrane is crucial in many biological processes. In this study, using Onsager variational principle, we obtain a general wrapping equation…

Soft Condensed Matter · Physics 2023-01-16 Ke Xiao , Rui Ma , Chen-Xu Wu

Rod-like bacteria maintain their cylindrical shapes with remarkable precision during growth. However, they are also capable to adapt their shapes to external forces and constraints, for example by growing into narrow or curved confinements.…

Subcellular Processes · Quantitative Biology 2016-02-10 Ariel Amir , Sven van Teeffelen

A pure and incompressible material is confined between two plates such that it is heated from below and cooled from above. When its melting temperature is comprised between these two imposed temperatures, an interface separating liquid and…

Fluid Dynamics · Physics 2020-02-11 Jhaswantsing Purseed , Benjamin Favier , Laurent Duchemin , Eric W. Hester

Viruses are known to tolerate wide ranges of pH and salt conditions and to withstand internal pressures as high as 100 atmospheres. In this paper we investigate the mechanical properties of viral capsids, calling explicit attention to the…

Soft Condensed Matter · Physics 2009-11-11 Roya Zandi , David Reguera

We present a systematic experimental study of geometric and statistical properties of thermal plumes in turbulent Rayleigh-B\'{e}nard convection using the thermochromic-liquid-crystal (TLC) technique. The experiments were performed in three…

Fluid Dynamics · Physics 2015-05-18 Quan Zhou , Ke-Qing Xia

We present a novel approach to probe elastic properties of polyelectrolyte multilayer microcapsules. The method is based on measurements of the capsule load-deformation curves with the atomic force microscope. The experiment suggests that…

Soft Condensed Matter · Physics 2009-11-10 V. V. Lulevich , D. Andrienko , O. I. Vinogradova