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Software repositories contain a plethora of useful information that can be used to enhance software projects. Prior work has leveraged repository data to improve many aspects of the software development process, such as, help extract…

Software Engineering · Computer Science 2020-03-19 Ahmad Abdellatif , Khaled Badran , Emad Shihab

Research software is essential to modern research, but it requires ongoing human effort to sustain: to continually adapt to changes in dependencies, to fix bugs, and to add new features. Software sustainability institutes, amongst others,…

Software Engineering · Computer Science 2021-05-21 Daniel S. Katz , Jeffrey C. Carver , Neil P. Chue Hong , Sandra Gesing , Simon Hettrick , Tom Honeyman , Karthik Ram , Nicholas Weber

Background: Research software is crucial for enabling research discoveries and supporting data analysis, simulation, and interpretation across domains. However, evolving requirements, complex inputs, and legacy dependencies hinder the…

Software Engineering · Computer Science 2025-12-16 Md Ariful Islam Malik , Jeffrey C. Carver , Nasir U. Eisty

We present a set of computing tools and techniques that every researcher can and should adopt. These recommendations synthesize inspiration from our own work, from the experiences of the thousands of people who have taken part in Software…

Software Engineering · Computer Science 2016-10-17 Greg Wilson , Jennifer Bryan , Karen Cranston , Justin Kitzes , Lex Nederbragt , Tracy K. Teal

Challenges related to development, deployment, and maintenance of reusable software for science are becoming a growing concern. Many scientists' research increasingly depends on the quality and availability of software upon which their…

Datasets collecting software mentions from scholarly publications can potentially be used for research into the software that has been used in the published research, as well as into the practice of software citation. Recently, new software…

Software Engineering · Computer Science 2024-02-23 Stephan Druskat , Neil P. Chue Hong , Sammie Buzzard , Olexandr Konovalov , Patrick Kornek

Many data science students and practitioners don't see the value in making time to learn and adopt good coding practices as long as the code "works". However, code standards are an important part of modern data science practice, and they…

Computation · Statistics 2023-08-29 Randall Pruim , Maria-Cristiana Gîrjău , Nicholas J. Horton

Software is now a vital scientific instrument, providing the tools for data collection and analysis across disciplines from bioinformatics and computational physics, to the humanities. The software used in research is often home-grown and…

Software Engineering · Computer Science 2019-03-15 Mario Rosado de Souza , Robert Haines , Markel Vigo , Caroline Jay

Scholarly repositories are the cornerstone of modern open science, and their availability is vital for enacting its practices. To this end, scholarly registries such as FAIRsharing, re3data, OpenDOAR and ROAR give them presence and…

Digital Libraries · Computer Science 2022-07-27 Andrea Mannocci , Miriam Baglioni , Paolo Manghi

Improved software discovery is a prerequisite for greater software reuse: after all, if someone cannot find software for a particular task, they cannot reuse it. Understanding people's approaches and preferences when they look for software…

Computers and Society · Computer Science 2018-05-30 Michael Hucka , Matthew J. Graham

Almost all research work in computational neuroscience involves software. As researchers try to understand ever more complex systems, there is a continual need for software with new capabilities. Because of the wide range of questions being…

Neurons and Cognition · Quantitative Biology 2013-11-21 Marc-Oliver Gewaltig , Robert Cannon

Are others using software you've written in their research and citing it as you want it to be cited? Software can be cited in different ways, some good, and some not good at all for tracking and counting citations in indexers such as ADS…

Instrumentation and Methods for Astrophysics · Physics 2022-12-27 Alice Allen

In computational science and in computer science, research software is a central asset for research. Computational science is the application of computer science and software engineering principles to solving scientific problems, whereas…

Software Engineering · Computer Science 2019-08-19 Wilhelm Hasselbring , Leslie Carr , Simon Hettrick , Heather Packer , Thanassis Tiropanis

Scientific advancement relies on the ability to share and reproduce results. When data analysis or calculations are carried out using software written by scientists there are special challenges around code versions, quality and code…

Software Engineering · Computer Science 2025-07-09 S. Lee , C. Myers , A. Yang , T. Zhang , S. J. L. Billinge

This paper proposes an interactive repository type for research software metadata which measures and documents software sustainability by accumulating metadata, and computing sustainability metrics over them. Such a repository would help to…

Software Engineering · Computer Science 2016-08-18 Stephan Druskat

Background: Research software is software developed by and/or used by researchers, across a wide variety of domains, to perform their research. Because of the complexity of research software, developers cannot conduct exhaustive testing. As…

Software Engineering · Computer Science 2021-10-29 Nasir U. Eisty , Jeffrey C. Carver

Scientific workflow has become essential in software engineering because it provides a structured approach to designing, executing, and analyzing scientific experiments. Software developers and researchers have developed hundreds of…

Software Engineering · Computer Science 2023-09-15 Khairul Alam , Banani Roy , Alexander Serebrenik

The organizations and researchers producing research software face a common problem of making their software sustainable beyond funding provided by a single research project. This is addressed by research software engineers through building…

Software Engineering · Computer Science 2024-06-05 Deekshitha , Rena Bakhshi , Jason Maassen , Carlos Martinez Ortiz , Rob van Nieuwpoort , Slinger Jansen

Recent reproducibility case studies have raised concerns showing that much of the deposited research has not been reproducible. One of their conclusions was that the way data repositories store research data and code cannot fully facilitate…

Digital Libraries · Computer Science 2020-06-18 Ana Trisovic , Philip Durbin , Tania Schlatter , Gustavo Durand , Sonia Barbosa , Danny Brooke , Mercè Crosas

As computer systems become more and more complex, software and tools lag more and more behind. This is especially true for scientific software that often demands high performance, and thus needs to take advantage of parallelisms, memory…

Computers and Society · Computer Science 2013-09-11 Anne C. Elster