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Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

A clustering algorithm partitions a set of data points into smaller sets (clusters) such that each subset is more tightly packed than the whole. Many approaches to clustering translate the vector data into a graph with edges reflecting a…

Geometric Topology · Mathematics 2012-06-06 Jesse Johnson

We evaluate several augmentations to the choropleth map to convey additional information, including glyphs, 3D, cartograms, juxtaposed maps, and shading methods. While choropleth maps are a common method used to represent societal data,…

Human-Computer Interaction · Computer Science 2020-05-04 Lonni Besançon , Matthew Cooper , Anders Ynnerman , Frédéric Vernier

Graphs have often been used to answer questions about the interaction between real-world entities by taking advantage of their capacity to represent complex topologies. Complex networks are known to be graphs that capture such non-trivial…

Machine Learning · Computer Science 2022-06-03 Gabriel Spadon , Jose F. Rodrigues-Jr

Roads are among the most essential components of any country's infrastructure. By facilitating the movement and exchange of people, ideas, and goods, they support economic and cultural activity both within and across local and international…

Computer Vision and Pattern Recognition · Computer Science 2020-06-16 John Kamalu , Benjamin Choi

In the past decade, cities have experienced rapid growth, expansion, and changes in their community structure. Many aspects of critical urban infrastructure are closely coupled with the human communities that they serve. Urban communities…

Social and Information Networks · Computer Science 2018-12-12 Weisi Guo , Guillem Mosquera Donate , Stephen Law , Samuel Johnson , Maria Liakata , Alan Wilson

The transparency nature of Open Data is beneficial for citizens to evaluate government work performance. In Indonesia, each government bodies or ministry have their own standard operating procedure on data treatment resulting in incoherent…

Computers and Society · Computer Science 2021-02-18 A. Alamsyah , T. T. Gustyana , A. D. Fajaryanto , D. Septiafani

Indexes are useful for summarizing multivariate information into single metrics for monitoring, communicating, and decision-making. While most work has focused on defining new indexes for specific purposes, more attention needs to be…

Computation · Statistics 2026-02-24 H. Sherry Zhang , Dianne Cook , Ursula Laa , Nicolas Langrené , Patricia Menéndez

We consider the problem of recovering a binary rating matrix as well as clusters of users and items based on a partially observed matrix together with side-information in the form of social and item similarity graphs. These two graphs are…

Information Theory · Computer Science 2021-01-14 Qiaosheng Zhang , Vincent Y. F. Tan , Changho Suh

Due to the advent of the expressions of data other than tabular formats, the topological compositions which make samples interrelated came into prominence. Analogically, those networks can be interpreted as social connections, dataflow…

Social and Information Networks · Computer Science 2023-01-27 Hacı İsmail Aslan , Chang Choi , Hoon Ko

Population displacement is a housing-related involuntary residential dislocation. It has become increasingly widespread in many cities, particularly in neighbourhoods undergoing rapid economic and demographic change, and measuring it is…

Computational Geometry · Computer Science 2026-04-15 Rita Rodríguez Vázquez , Manuel Cuerno

There is a growing need for unbiased clustering methods, ideally automated. We have developed a topology-based analysis tool called Two-Tier Mapper (TTMap) to detect subgroups in global gene expression datasets and identify their…

Genomics · Quantitative Biology 2018-01-08 Rachel Jeitziner , Mathieu Carrière , Jacques Rougemont , Steve Oudot , Kathryn Hess , Cathrin Brisken

Bangladesh is an over populated developing country where crisis of food is a major issue, it faces different infrastructure problem in every sector. For Poverty Alleviation from the country we have to confirm cultivable land to increase the…

Topology based dimensionality reduction methods such as t-SNE and UMAP have seen increasing success and popularity in high-dimensional data. These methods have strong mathematical foundations and are based on the intuition that the topology…

Artificial Intelligence · Computer Science 2021-12-17 Ayush Dalmia , Suzanna Sia

Unsupervised node clustering (or community detection) is a classical graph learning task. In this paper, we study algorithms, which exploit the geometry of the graph to identify densely connected substructures, which form clusters or…

Social and Information Networks · Computer Science 2023-07-20 Yu Tian , Zachary Lubberts , Melanie Weber

Hierarchical spatial models are very flexible and popular for a vast array of applications in areas such as ecology, social science, public health, and atmospheric science. It is common to carry out Bayesian inference for these models via…

Computation · Statistics 2021-05-17 Ben Seiyon Lee , Murali Haran

Large-scale population-based studies in medicine are a key resource towards better diagnosis, monitoring, and treatment of diseases. They also serve as enablers of clinical decision support systems, in particular Computer Aided Diagnosis…

Machine Learning · Computer Science 2022-03-01 Gerome Vivar , Anees Kazi , Hendrik Burwinkel , Andreas Zwergal , Nassir Navab , Seyed-Ahmad Ahmadi

This paper looks into the problem of handling imbalanced data in a multi-label classification problem. The problem is solved by proposing two novel methods that primarily exploit the geometric relationship between the feature vectors. The…

Machine Learning · Computer Science 2020-10-13 Anima Majumder , Samrat Dutta , Swagat Kumar , Laxmidhar Behera

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

We propose a model for network community detection using topological data analysis, a branch of modern data science that leverages theory from algebraic topology to statistical analysis and machine learning. Specifically, we use cellular…

Social and Information Networks · Computer Science 2023-10-10 Arne Wolf , Anthea Monod
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