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Reliably predicting the products of chemical reactions presents a fundamental challenge in synthetic chemistry. Existing machine learning approaches typically produce a reaction product by sequentially forming its subparts or intermediate…

Chemical Physics · Physics 2021-06-16 Hangrui Bi , Hengyi Wang , Chence Shi , Connor Coley , Jian Tang , Hongyu Guo

Organic reaction prediction is a critical task in drug discovery. Recently, researchers have achieved non-autoregressive reaction prediction by modeling the redistribution of electrons, resulting in state-of-the-art top-1 accuracy, and…

Chemical Physics · Physics 2023-06-13 Ziqiao Meng , Peilin Zhao , Yang Yu , Irwin King

Most sequence-to-sequence (seq2seq) models are autoregressive; they generate each token by conditioning on previously generated tokens. In contrast, non-autoregressive seq2seq models generate all tokens in one pass, which leads to increased…

Computation and Language · Computer Science 2019-10-10 Xuezhe Ma , Chunting Zhou , Xian Li , Graham Neubig , Eduard Hovy

Central to our understanding of chemical reactivity is the principle of mass conservation, which is fundamental for ensuring physical consistency, balancing equations, and guiding reaction design. However, data-driven computational models…

Machine Learning · Computer Science 2025-02-19 Joonyoung F. Joung , Mun Hong Fong , Nicholas Casetti , Jordan P. Liles , Ne S. Dassanayake , Connor W. Coley

Autoregressive generative models naturally generate variable-length sequences, while non-autoregressive models struggle, often imposing rigid, token-wise structures. We propose Edit Flows, a non-autoregressive model that overcomes these…

Machine Learning · Computer Science 2025-11-13 Marton Havasi , Brian Karrer , Itai Gat , Ricky T. Q. Chen

Chemical reactions can be described as the stepwise redistribution of electrons in molecules. As such, reactions are often depicted using `arrow-pushing' diagrams which show this movement as a sequence of arrows. We propose an electron path…

Existing captioning models often adopt the encoder-decoder architecture, where the decoder uses autoregressive decoding to generate captions, such that each token is generated sequentially given the preceding generated tokens. However,…

Computer Vision and Pattern Recognition · Computer Science 2019-06-04 Junlong Gao , Xi Meng , Shiqi Wang , Xia Li , Shanshe Wang , Siwei Ma , Wen Gao

The two dominant approaches to neural text generation are fully autoregressive models, using serial beam search decoding, and non-autoregressive models, using parallel decoding with no output dependencies. This work proposes an…

Computation and Language · Computer Science 2020-12-08 Yuntian Deng , Alexander M. Rush

Generating new molecules is fundamental to advancing critical applications such as drug discovery and material synthesis. Flows can generate molecules effectively by inverting the encoding process, however, existing flow models either…

Machine Learning · Computer Science 2022-10-14 Yogesh Verma , Samuel Kaski , Markus Heinonen , Vikas Garg

Molecular graph generation is a fundamental problem for drug discovery and has been attracting growing attention. The problem is challenging since it requires not only generating chemically valid molecular structures but also optimizing…

Machine Learning · Computer Science 2020-02-28 Chence Shi , Minkai Xu , Zhaocheng Zhu , Weinan Zhang , Ming Zhang , Jian Tang

Accurately predicting chemical reaction outcomes and potential byproducts is a fundamental task of modern chemistry, enabling the efficient design of synthetic pathways and driving progress in chemical science. Reaction mechanism, which…

Chemical Physics · Physics 2025-03-14 Shuan Chen , Kye Sung Park , Taewan Kim , Sunkyu Han , Yousung Jung

We propose a conditional non-autoregressive neural sequence model based on iterative refinement. The proposed model is designed based on the principles of latent variable models and denoising autoencoders, and is generally applicable to any…

Machine Learning · Computer Science 2018-08-29 Jason Lee , Elman Mansimov , Kyunghyun Cho

Autoregressive decoding is the only part of sequence-to-sequence models that prevents them from massive parallelization at inference time. Non-autoregressive models enable the decoder to generate all output symbols independently in…

Computation and Language · Computer Science 2018-11-13 Jindřich Libovický , Jindřich Helcl

In this work, we first revisit the sampling issues in current autoregressive (AR) image generation models and identify that image tokens, unlike text tokens, exhibit lower information density and non-uniform spatial distribution.…

Computer Vision and Pattern Recognition · Computer Science 2025-10-21 Xiaoxiao Ma , Feng Zhao , Pengyang Ling , Haibo Qiu , Zhixiang Wei , Hu Yu , Jie Huang , Zhixiong Zeng , Lin Ma

Autoregressive sequence models achieve state-of-the-art performance in domains like machine translation. However, due to the autoregressive factorization nature, these models suffer from heavy latency during inference. Recently,…

Machine Learning · Computer Science 2020-01-10 Zhiqing Sun , Zhuohan Li , Haoqing Wang , Zi Lin , Di He , Zhi-Hong Deng

Flow models are effective at progressively generating realistic images, but they generally struggle to capture long-range dependencies during the generation process as they compress all the information from previous time steps into a single…

Computer Vision and Pattern Recognition · Computer Science 2025-06-17 Mude Hui , Rui-Jie Zhu , Songlin Yang , Yu Zhang , Zirui Wang , Yuyin Zhou , Jason Eshraghian , Cihang Xie

3D human reaction generation faces three main challenges:(1) high motion fidelity, (2) real-time inference, and (3) autoregressive adaptability for online scenarios. Existing methods fail to meet all three simultaneously. We propose…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Zichen Geng , Zeeshan Hayder , Wei Liu , Hesheng Wang , Ajmal Mian

We present OneFlow, the first non-autoregressive multimodal model that enables variable-length and concurrent mixed-modal generation. Unlike autoregressive models that enforce rigid causal ordering between text and image generation, OneFlow…

Artificial Intelligence · Computer Science 2025-12-11 John Nguyen , Marton Havasi , Tariq Berrada , Luke Zettlemoyer , Ricky T. Q. Chen

Diffusion-based graph generative models have recently obtained promising results for graph generation. However, existing diffusion-based graph generative models are mostly one-shot generative models that apply Gaussian diffusion in the…

Artificial Intelligence · Computer Science 2023-07-19 Lingkai Kong , Jiaming Cui , Haotian Sun , Yuchen Zhuang , B. Aditya Prakash , Chao Zhang

A graph generative model defines a distribution over graphs. One type of generative model is constructed by autoregressive neural networks, which sequentially add nodes and edges to generate a graph. However, the likelihood of a graph under…

Machine Learning · Statistics 2021-06-15 Xiaohui Chen , Xu Han , Jiajing Hu , Francisco J. R. Ruiz , Liping Liu
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