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This note introduces the $\texttt{LikelihoodGeometry}$ package for the computer algebra system $\textit{Macaulay2}$. This package gives tools to construct the likelihood correspondence of a discrete algebraic statistical model, a variety…

Computation · Statistics 2024-11-19 David Barnhill , John Cobb , Matthew Faust

We study maximum likelihood estimation in Gaussian graphical models from a geometric point of view. An algebraic elimination criterion allows us to find exact lower bounds on the number of observations needed to ensure that the maximum…

Statistics Theory · Mathematics 2012-05-30 Caroline Uhler

The Macaulay2 package GraphicalModels contains algorithms for the algebraic study of graphical models associated to undirected, directed and mixed graphs, and associated collections of conditional independence statements. Among the…

Commutative Algebra · Mathematics 2013-01-09 Luis David García-Puente , Sonja Petrović , Seth Sullivant

Maximum likelihood estimation (MLE) is a fundamental problem in statistics. Characteristics of the MLE problem for discrete algebraic statistical models are reflected in the geometry of the $\textit{likelihood correspondence}$, a variety…

Statistics Theory · Mathematics 2024-11-19 David Barnhill , John Cobb , Matthew Faust

Gaussian mixture models are central to classical statistics, widely used in the information sciences, and have a rich mathematical structure. We examine their maximum likelihood estimates through the lens of algebraic statistics. The MLE is…

Statistics Theory · Mathematics 2019-04-19 Carlos Améndola , Mathias Drton , Bernd Sturmfels

Gaussian graphical models are used throughout the natural sciences, social sciences, and economics to model the statistical relationships between variables of interest in the form of a graph. We here provide a pedagogic introduction to…

Statistics Theory · Mathematics 2017-07-17 Caroline Uhler

Maximum likelihood estimation (MLE) is a fundamental computational problem in statistics. In this paper, MLE for statistical models with discrete data is studied from an algebraic statistics viewpoint. A reformulation of the MLE problem in…

Statistics Theory · Mathematics 2014-05-27 Jose Israel Rodriguez

We analyze the problem of maximum likelihood estimation for Gaussian distributions that are multivariate totally positive of order two (MTP2). By exploiting connections to phylogenetics and single-linkage clustering, we give a simple proof…

Methodology · Statistics 2018-05-29 Steffen Lauritzen , Caroline Uhler , Piotr Zwiernik

We study maximum likelihood estimation for the statistical model for undirected random graphs, known as the $\beta$-model, in which the degree sequences are minimal sufficient statistics. We derive necessary and sufficient conditions, based…

Other Statistics · Statistics 2013-06-19 Alessandro Rinaldo , Sonja Petrović , Stephen E. Fienberg

We study multivariate Gaussian statistical models whose maximum likelihood estimator (MLE) is a rational function of the observed data. We establish a one-to-one correspondence between such models and the solutions to a nonlinear…

Algebraic Geometry · Mathematics 2025-09-04 Carlos Améndola , Lukas Gustafsson , Kathlén Kohn , Orlando Marigliano , Anna Seigal

We introduce the Macaulay2 package GradedLieAlgebras for doing computations in graded Lie algebras presented by generators and relations.

Rings and Algebras · Mathematics 2021-01-27 Clas Löfwall , Samuel Lundqvist

Graphical models with bi-directed edges (<->) represent marginal independence: the absence of an edge between two vertices indicates that the corresponding variables are marginally independent. In this paper, we consider maximum likelihood…

Methodology · Statistics 2012-12-12 Mathias Drton , Thomas S. Richardson

We study maximum likelihood estimation in log-linear models under conditional Poisson sampling schemes. We derive necessary and sufficient conditions for existence of the maximum likelihood estimator (MLE) of the model parameters and…

Statistics Theory · Mathematics 2012-07-24 Stephen E. Fienberg , Alessandro Rinaldo

Numerical nonlinear algebra is applied to maximum likelihood estimation for Gaussian models defined by linear constraints on the covariance matrix. We examine the generic case as well as special models (e.g. Toeplitz, sparse, trees) that…

Computation · Statistics 2020-10-07 Bernd Sturmfels , Sascha Timme , Piotr Zwiernik

Due to its heavy-tailed and fully parametric form, the multivariate generalized Gaussian distribution (MGGD) has been receiving much attention for modeling extreme events in signal and image processing applications. Considering the…

Applications · Statistics 2017-02-27 F. Pascal , L. Bombrun , J. Y. Tourneret , Y. Berthoumieu

Most statistical software packages implement numerical strategies for computation of maximum likelihood estimates in random effects models. Little is known, however, about the algebraic complexity of this problem. For the one-way layout…

Statistics Theory · Mathematics 2013-05-07 Elizabeth Gross , Mathias Drton , Sonja Petrović

We introduce the Probability package for Macaulay2, which provides an interface for users to compute probabilities and generate random variates from a wide variety of univariate probability distributions.

Algebraic Geometry · Mathematics 2024-06-05 Douglas A. Torrance

We study multivariate Gaussian models that are described by linear conditions on the concentration matrix. We compute the maximum likelihood (ML) degrees of these models. That is, we count the critical points of the likelihood function over…

Algebraic Geometry · Mathematics 2021-02-23 Carlos Améndola , Lukas Gustafsson , Kathlén Kohn , Orlando Marigliano , Anna Seigal

Monte Carlo maximum likelihood (MCML) provides an elegant approach to find maximum likelihood estimators (MLEs) for latent variable models. However, MCML algorithms are computationally expensive when the latent variables are…

Computation · Statistics 2020-08-05 Jaewoo Park , Murali Haran

In this paper we revisit the likelihood geometry of Gaussian graphical models. We give a detailed proof that the ML-degree behaves monotonically on induced subgraphs. Furthermore, we complete a missing argument that the ML-degree of the…

Statistics Theory · Mathematics 2024-10-10 Carlos Améndola , Rodica Andreea Dinu , Mateusz Michałek , Martin Vodička
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