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Topological data analysis (TDA) is a rising branch in modern applied mathematics. It extracts topological structures as features of a given space and uses these features to analyze digital data. Persistent homology, one of the central tools…

Algebraic Topology · Mathematics 2025-05-26 Chuan-Shen Hu

We discuss and review recent developments in the area of applied algebraic topology, such as persistent homology and barcodes. In particular, we discuss how these are related to understanding more about manifold learning from random point…

Probability · Mathematics 2015-03-13 Robert J. Adler , Omer Bobrowski , Matthew S. Borman , Eliran Subag , Shmuel Weinberger

Techniques from computational topology, in particular persistent homology, are becoming increasingly relevant for data analysis. Their stable metrics permit the use of many distance-based data analysis methods, such as multidimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

We propose a unified framework based on persistent homology (PH) to characterize both local and global structures in disordered systems. It can simultaneously generate local and global descriptors using the same algorithm and data…

Disordered Systems and Neural Networks · Physics 2025-11-03 An Wang , Li Zou

Heterostructures of stacked two-dimensional lattices have shown great promise for engineering novel material properties. As an archetypal example of such a system, the hexagon-shared honeycomb-kagome lattice has been experimentally…

Materials Science · Physics 2025-02-21 Chan Bin Bark , Hanbyul Kim , Seik Pak , Hong-Guk Min , Sungkyun Ahn , Youngkuk Kim , Moon Jip Park

In topological data analysis (TDA), one often studies the shape of data by constructing a filtered topological space, whose structure is then examined using persistent homology. However, a single filtered space often does not adequately…

Algebraic Topology · Mathematics 2023-03-14 Magnus Bakke Botnan , Michael Lesnick

The subject of persistent homology has vitalized applications of algebraic topology to point cloud data and to application fields far outside the realm of pure mathematics. The area has seen several fundamentally important results that are…

Algebraic Topology · Mathematics 2013-11-12 Mikael Vejdemo-Johansson

The following article is an application of commutative algebra to the study of multiparameter persistent homology in topological data analysis. In particular, the theory of finite free resolutions of modules over polynomial rings is applied…

Representation Theory · Mathematics 2022-10-28 Amelie Schreiber

Topological data analysis is an emerging area in exploratory data analysis and data mining. Its main tool, persistent homology, has become a popular technique to study the structure of complex, high-dimensional data. In this paper, we…

Graphics · Computer Science 2017-10-04 Mustafa Hajij , Bei Wang , Carlos Scheidegger , Paul Rosen

Zigzag persistent homology is a powerful generalisation of persistent homology that allows one not only to compute persistence diagrams with less noise and using less memory, but also to use persistence in new fields of application.…

Computational Geometry · Computer Science 2016-08-23 Clément Maria , Steve Oudot

We introduce topological methods for quantifying spatially heterogeneous dynamics, and use these tools to analyze particle-tracking data for a quasi-two-dimensional granular system of air-fluidized beads on approach to jamming. In…

Soft Condensed Matter · Physics 2007-08-30 A. R. Abate , D. J. Durian

Understanding the magnetic fields of the Sun is essential for unraveling the underlying mechanisms driving solar activity. Integrating topological data analysis techniques into these investigations can provide valuable insights into the…

Solar and Stellar Astrophysics · Physics 2024-01-31 Pablo Santamarina Guerrero , Yukio Katsukawa , Shin Toriumi , David Orozco Suárez

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

Characterization of medium-range order in amorphous materials and its relation to short-range order is discussed. A new topological approach is presented here to extract a hierarchical structure of amorphous materials, which is robust…

Soft Condensed Matter · Physics 2015-02-27 Takenobu Nakamura , Yasuaki Hiraoka , Akihiko Hirata , Emerson G. Escolar , Yasumasa Nishiura

Flat-band periodic materials are characterized by a linear spectrum containing at least one band where the propagation constant remains nearly constant irrespective of the Bloch momentum across the Brillouin zone. These materials provide a…

Pattern Formation and Solitons · Physics 2024-09-24 Shuang Shen , Yiqi Zhang , Yaroslav V. Kartashov , Yongdong Li , Vladimir V. Konotop

Persistent homology (PH) studies the topology of data across multiple scales by building nested collections of topological spaces called filtrations, computing homology and returning an algebraic object that can be vizualised as a…

Algebraic Topology · Mathematics 2024-11-14 David Beers , Heather A Harrington , Jacob Leygonie , Uzu Lim , Louis Theran

A method is presented for the distributed computation of persistent homology, based on an extension of the generalized Mayer-Vietoris principle to filtered spaces. Cellular cosheaves and spectral sequences are used to compute global…

Algebraic Topology · Mathematics 2023-08-11 Iris H. R. Yoon , Robert Ghrist

Photonic structures with topologically nontrivial bands are usually designed by arranging simple meta-atoms, ideally, single-mode ones, in a carefully designed photonic lattice with symmetry that guarantees the emergence of topological…

Optics · Physics 2020-10-21 Roman S. Savelev , Maxim A. Gorlach

We study the persistent homology of both functional data on compact topological spaces and structural data presented as compact metric measure spaces. One of our goals is to define persistent homology so as to capture primarily properties…

Algebraic Topology · Mathematics 2018-11-27 Haibin Hang , Facundo Mémoli , Washington Mio

Using a set of $\Lambda$CDM simulations of cosmic structure formation, we study the evolving connectivity and changing topological structure of the cosmic web using state-of-the-art tools of multiscale topological data analysis (TDA). We…