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Synthetic virus-like particles (VLP), designed from simplified building blocks, can reduce the complexity of native viral proteins and be tailored for specific applications. Using molecular dynamics simulations, we investigate the role of…

Chemical Physics · Physics 2025-08-11 Ya-Wen Hsiao , Magnus Hedström , Maxim G Ryadnov , David J Bray , Jason Crain

Oxygen plays a critical role in strongly correlated transition metal oxides as crystal field effect is one of the key factors that determine the degree of localization of the valence d/f states. Based on the localization, a set of…

Materials Science · Physics 2016-03-29 Ajit Jena , B. R. K. Nanda

The inert polymer polyethylene glycol (PEG) induces a "bundling" phenomenon in F-actin solutions when its concentration exceeds a critical onset value C_o. Over a limited range of PEG molecular weight and ionic strength, C_o can be…

Soft Condensed Matter · Physics 2009-11-10 M. Hosek , J. X. Tang

Rheumatoid arthritis-associated joint pain is frequently observed independent of disease activity, suggesting unidentified pain mechanisms. We demonstrate that antibodies binding to cartilage, specific for collagen type II (CII) or…

Photodynamically active fibres (PAFs) are a novel class of stimulus-sensitive systems capable of triggering antibiotic-free antibacterial effect on-demand when exposed to light. Despite their relevance in infection control, however, the…

Tissues and Organs · Quantitative Biology 2021-01-07 Amy Contreras , Michael J. Raxworthy , Simon Wood , Giuseppe Tronci

The self-assembly of pyridyl-functionalized triazine (T4PT) was studied on Au(111) using low-temperature scanning tunneling microscopy (STM) under ultra-high vacuum conditions combined with density functional theory (DFT) calculations. In…

Antibodies are affinity proteins with a wide spectrum of applications in analytical and therapeutic biology. Proteins showing specific recognition for a chosen molecular target can be isolated and their encoding sequence identified in vitro…

The PI3K/AKT signaling pathway is triggered by recruitment of AKT to cellular membranes. Although AKT is a multidomain serine/threonine kinase composed of an N-terminal pleckstrin homology (PH) domain and a C-terminal kinase domain, how…

Biological Physics · Physics 2026-01-30 Yuki Nakagaki , Eiji Yamamoto

Understanding of degradation mechanisms in polymer:fullerene bulk-heterojunctions on the microscopic level aimed at improving their intrinsic stability is crucial for the breakthrough of organic photovoltaics. These materials are vulnerable…

Materials Science · Physics 2012-01-04 Andreas Sperlich , Hannes Kraus , Carsten Deibel , Hubert Blok , Jan Schmidt , Vladimir Dyakonov

Collective excitations of charged particles under the influence of an electromagnetic field give rise to a rich variety of hybrid light-matter quasiparticles with unique properties. In metals, intraband collective response manifested by…

Mesoscale and Nanoscale Physics · Physics 2025-05-16 Tomer Eini , M. F. C. Martins Quintela , J. C. G. Henriques , R. M. Ribeiro , Yarden Mazor , N. M. R. Peres , Itai Epstein

Little is known about mechanics underlying the interaction among platelets during activation and aggregation. Although the strength of a blood thrombus has likely major biological importance, no previous study has measured directly the…

The presence of an expanded polyglutamine produces a toxic gain of function in huntingtin. Protein aggregation resulting from this gain of function is likely to be the cause of neuronal death. Two main mechanisms of aggregation have been…

Biomolecules · Quantitative Biology 2025-11-07 Guylaine Hoffner , Philippe Djian

Integrins are transmembrane proteins involved in hemostasis, wound healing, immunity and cancer. In response to intracellular signals and ligand binding, integrins adopt different conformations: the bent (resting) form; the intermediate…

Biological Physics · Physics 2020-12-22 Una Janke , Martin Kulke , Ina Buchholz , Norman Geist , Walter Langel , Mihaela Delcea

The clonal expansion of T cells during an infection is tightly regulated to ensure an appropriate immune response against invading pathogens. Although experiments have mapped the trajectory from expansion to contraction, the interplay…

Dynamical Systems · Mathematics 2021-10-08 Pantea Pooladvand , Peter S. Kim , Barbara Fazekas de St Groth

The immune system normally protects the human host against death by infection. However, when an immune response is mistakenly directed at self antigens, autoimmune disease can occur. We describe a model of protein evolution to simulate the…

Populations and Evolution · Quantitative Biology 2009-11-11 Jun Sun , David J. Earl , Michael W. Deem

Through experimental studies, many details of the pathway of integrin $\alpha_{\rm IIb}\beta_3$ activation by ADP during the platelet aggregation process have been mapped out. ADP binds to two separate G protein coupled receptors on…

Molecular Networks · Quantitative Biology 2025-03-26 Keshav B. Patel , Wolfgang Bergmeier , Aaron L. Fogelson

Idiosyncratic adverse drug reactions are unpredictable, dose independent and potentially life threatening; this makes them a major factor contributing to the cost and uncertainty of drug development. Clinical data suggest that many such…

Ice recrystallization inhibition (IRI) activity of polymers generally increases with chain length. However, for polyproline (PPro), a highly potent cryoprotectant, the IRI activity varies nonmonotonically with the degree of polymerization…

Soft Condensed Matter · Physics 2025-09-12 Wentao Yang , Yucong Liao , Zhaoru Sun

Healthy articular cartilage has excellent lubricating properties, with friction coefficients reaching extremely low values at physiological pressures. Such high-performing lubricating layer in joints is attributed to the surface hydration…

Soft Condensed Matter · Physics 2024-04-09 Weifeng Lin , Monika Kluzek , Nir kampf , Yifeng Cao , Jacob Klein

Identifying the driving forces and the mechanism of association of huntingtin-exon1, a close marker for the progress of Huntington's disease, is an important prerequisite towards finding potential drug targets, and ultimately a cure. We…

Biomolecules · Quantitative Biology 2009-11-10 Martin G. Burke , Rudiger Woscholski , Sophia N. Yaliraki
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