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This study challenges strictly guaranteeing ``dissipativity'' of a dynamical system represented by neural networks learned from given time-series data. Dissipativity is a crucial indicator for dynamical systems that generalizes stability…

Machine Learning · Computer Science 2024-12-20 Yuji Okamoto , Ryosuke Kojima

Using equilibrium fluctuations to understand the response of a physical system to an externally imposed perturbation is the basis for linear response theory, which is widely used to interpret experiments and shed light on microscopic…

Statistical Mechanics · Physics 2024-06-24 Jérémie Klinger , Grant M. Rotskoff

The dynamics of systems of interacting agents is determined by the structure of their coupling network. The knowledge of the latter is, therefore, highly desirable, for instance, to develop efficient control schemes, to accurately predict…

Adaptation and Self-Organizing Systems · Physics 2021-10-13 Melvyn Tyloo , Robin Delabays , Philippe Jacquod

In thermodynamic equilibrium, the fluctuation-dissipation theorem links thermal fluctuations and dissipation. Biological systems, however, are driven out of equilibrium by internal processes that produce additional, active fluctuations.…

Soft Condensed Matter · Physics 2026-01-29 Ashot Matevosyan , Frank Jülicher , Ricard Alert

Fluid-structure interactions between active and passive components are important for many biological systems to function. A particular example is chromatin in the cell nucleus, where ATP-powered processes drive coherent motions of the…

Soft Condensed Matter · Physics 2024-02-15 Scott Weady , David B. Stein , Alexandra Zidovska , Michael J. Shelley

Living systems produce "persistent" copies of information-carrying polymers, in which template and copy sequences remain correlated after physically decoupling. We identify a general measure of the thermodynamic efficiency with which these…

Statistical Mechanics · Physics 2022-06-08 Jenny Poulton , Pieter Rein ten Wolde , Thomas E Ouldridge

In recent years, nonlinear dynamic system identification using artificial neural networks has garnered attention due to its broad potential applications across science and engineering. However, purely data-driven approaches often struggle…

Machine Learning · Computer Science 2025-11-06 Fabian J. Roth , Dominik K. Klein , Maximilian Kannapinn , Jan Peters , Oliver Weeger

Predicting and enhancing inherent properties based on molecular structures is paramount to design tasks in medicine, materials science, and environmental management. Most of the current machine learning and deep learning approaches have…

Machine Learning · Computer Science 2024-04-08 Zachary R. Fox , Ayana Ghosh

We relate the breakdown of equations of states for the mechanical pressure of generic dry active systems to the lack of momentum conservation in such systems. We show how sources and sinks of momentum arise generically close to confining…

Statistical Mechanics · Physics 2017-11-21 Yaouen Fily , Yariv Kafri , Alexandre P. Solon , Julien Tailleur , Ari Turner

Exploring the spectrum of novel behaviors a physical system can produce can be a labor-intensive task. Active learning is a collection of iterative sampling techniques developed in response to this challenge. However, these techniques often…

Soft Condensed Matter · Physics 2023-08-03 Martin J. Falk , Finnegan D. Roach , William Gilpin , Arvind Murugan

Even simple active systems can show a plethora of intriguing phenomena and often we find complexity were we would have expected simplicity. One striking example is the occurrence of a quiescent or absorbing state with frozen fluctuations…

Biological Physics · Physics 2015-05-30 Volker Schaller , Christoph Weber , Benjamin Hammerich , Erwin Frey , Andreas R. Bausch

To study the impact of active systems on their surroundings, we introduce a model that couples an active nematic fluid to an isotropic substrate fluid via friction. We numerically show that as the active layer develops turbulence, the…

Soft Condensed Matter · Physics 2025-12-01 Gianmarco Spera , Julia M. Yeomans , Sumesh P. Thampi

We develop a framework describing the dynamics and thermodynamics of open non-ideal reaction-diffusion systems, which embodies Flory-Huggins theories of mixtures and chemical reaction network theories. Our theory elucidates the mechanisms…

Molecular Networks · Quantitative Biology 2024-12-05 Francesco Avanzini , Timur Aslyamov , Étienne Fodor , Massimiliano Esposito

The study of active matter has revealed novel non-equilibrium collective behaviors, illustrating their potential as a new materials platform. However, most works treat active matter as unregulated systems with uniform microscopic energy…

Soft Condensed Matter · Physics 2021-10-08 Martin J Falk , Vahid Alizadehyazdi , Heinrich Jaeger , Arvind Murugan

Traditional energy-based learning models associate a single energy metric to each configuration of variables involved in the underlying optimization process. Such models associate the lowest energy state to the optimal configuration of…

Machine Learning · Computer Science 2020-04-10 Oindrila Chatterjee , Shantanu Chakrabartty

Nonreciprocal interactions that violate Newton's law 'actio=reactio' are ubiquitous in nature and are currently intensively investigated in active matter, chemical reaction networks, population dynamics, and many other fields. An…

Statistical Mechanics · Physics 2026-02-24 Atul Tanaji Mohite , Heiko Rieger

In this paper we consider the machine learning (ML) task of predicting tipping point transitions and long-term post-tipping-point behavior associated with the time evolution of an unknown (or partially unknown), non-stationary, potentially…

Machine Learning · Computer Science 2023-03-08 Dhruvit Patel , Edward Ott

The influence of power-law interactions on the dynamics of many-body systems far from equilibrium is much less explored than their effect on static and thermodynamic properties. To gain insight into this problem we introduce and analyze…

Quantum Gases · Physics 2016-01-07 Ricardo Gutiérrez , Juan P. Garrahan , Igor Lesanovsky

Deep networks are commonly used to model dynamical systems, predicting how the state of a system will evolve over time (either autonomously or in response to control inputs). Despite the predictive power of these systems, it has been…

Machine Learning · Computer Science 2020-01-20 Gaurav Manek , J. Zico Kolter

We study the time evolution of a sessile liquid droplet, which is initially put onto a solid surface in a non-equilibrium configuration and then evolves towards its equilibrium shape. We adapt here the standard approach to the dynamics of…

Materials Science · Physics 2007-05-23 M. J. de Ruijter , J. De Coninck , G. Oshanin