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Disease-gene prediction (DGP) refers to the computational challenge of predicting associations between genes and diseases. Effective solutions to the DGP problem have the potential to accelerate the therapeutic development pipeline at early…

Machine Learning · Computer Science 2019-07-15 Vikash Singh , Pietro Lio'

Taskflow aims to streamline the building of parallel and heterogeneous applications using a lightweight task graph-based approach. Taskflow introduces an expressive task graph programming model to assist developers in the implementation of…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-08 Tsung-Wei Huang , Dian-Lun Lin , Chun-Xun Lin , Yibo Lin

Deep learning (DL) jobs use multi-dimensional parallelism, i.e. combining data, model, and pipeline parallelism, to use large GPU clusters efficiently. Long-running jobs may experience changes to their GPU allocation: (i) resource…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-09-27 Marcel Wagenländer , Guo Li , Bo Zhao , Luo Mai , Peter Pietzuch

Graph Neural Networks (GNNs) have recently become increasingly popular due to their ability to learn complex systems of relations or interactions arising in a broad spectrum of problems ranging from biology and particle physics to social…

Machine Learning · Computer Science 2020-10-12 Emanuele Rossi , Ben Chamberlain , Fabrizio Frasca , Davide Eynard , Federico Monti , Michael Bronstein

Graph Neural Networks (GNNs) have been widely adopted due to their strong performance. However, GNN training often relies on expensive, high-performance computing platforms, limiting accessibility for many tasks. Profiling of representative…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-12 Tong Qiao , Ao Zhou , Yingjie Qi , Yiou Wang , Han Wan , Jianlei Yang , Chunming Hu

Graph neural networks (GNNs) are among the most powerful tools in deep learning. They routinely solve complex problems on unstructured networks, such as node classification, graph classification, or link prediction, with high accuracy.…

Machine Learning · Computer Science 2023-08-21 Maciej Besta , Torsten Hoefler

Heterogeneous graph neural network has unleashed great potential on graph representation learning and shown superior performance on downstream tasks such as node classification and clustering. Existing heterogeneous graph learning networks…

Machine Learning · Computer Science 2022-11-01 Tiehua Zhang , Yuze Liu , Yao Yao , Youhua Xia , Xin Chen , Xiaowei Huang , Jiong Jin

Probabilistic graphical modeling (PGM) provides a framework for formulating an interpretable generative process of data and expressing uncertainty about unknowns, but it lacks flexibility. Deep learning (DL) is an alternative framework for…

Machine Learning · Statistics 2021-04-27 Adji B. Dieng

Memory replay based techniques have shown great success for continual learning with incrementally accumulated Euclidean data. Directly applying them to continually expanding networks, however, leads to the potential memory explosion problem…

Machine Learning · Computer Science 2024-07-02 Xikun Zhang , Dongjin Song , Yixin Chen , Dacheng Tao

Due to the development of graph neural networks, graph-based representation learning methods have made great progress in recommender systems. However, data sparsity is still a challenging problem that most graph-based recommendation methods…

Information Retrieval · Computer Science 2021-10-25 Chaoyang Wang , Zhiqiang Guo , Guohui Li , Jianjun Li , Peng Pan , Ke Liu

Temporal Knowledge Graph (TKG) completion models traditionally assume access to the entire graph during training. This overlooks challenges stemming from the evolving nature of TKGs, such as: (i) the model's requirement to generalize and…

Artificial Intelligence · Computer Science 2025-07-28 Mehrnoosh Mirtaheri , Ryan A. Rossi , Sungchul Kim , Kanak Mahadik , Tong Yu , Xiang Chen , Mohammad Rostami

Heterogeneous Graph Neural Networks (HGNNs) leverage diverse semantic relationships in Heterogeneous Graphs (HetGs) and have demonstrated remarkable learning performance in various applications. However, current distributed GNN training…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-21 Yuchen Zhong , Junwei Su , Chuan Wu , Minjie Wang

We introduce a learning-based framework to optimize tensor programs for deep learning workloads. Efficient implementations of tensor operators, such as matrix multiplication and high dimensional convolution, are key enablers of effective…

Machine Learning · Computer Science 2019-01-10 Tianqi Chen , Lianmin Zheng , Eddie Yan , Ziheng Jiang , Thierry Moreau , Luis Ceze , Carlos Guestrin , Arvind Krishnamurthy

Edge computing allows artificial intelligence and machine learning models to be deployed on edge devices, where they can learn from local data and collaborate to form a global model. Federated learning (FL) is a distributed machine learning…

Machine Learning · Computer Science 2024-05-03 Chris Xing Tian , Yibing Liu , Haoliang Li , Ray C. C. Cheung , Shiqi Wang

Graph neural networks (GNNs) are a powerful architecture for tackling graph learning tasks, yet have been shown to be oblivious to eminent substructures such as cycles. We present TOGL, a novel layer that incorporates global topological…

Machine Learning · Computer Science 2022-03-18 Max Horn , Edward De Brouwer , Michael Moor , Yves Moreau , Bastian Rieck , Karsten Borgwardt

Continuous-time dynamic graphs (CTDGs) are essential for modeling interconnected, evolving systems. Traditional methods for extracting knowledge from these graphs often depend on feature engineering or deep learning. Feature engineering is…

Machine Learning · Computer Science 2024-11-08 Ahmad Naser Eddin , Jacopo Bono , David Aparício , Hugo Ferreira , Pedro Ribeiro , Pedro Bizarro

The escalating complexity of network threats and the inherent class imbalance in traffic data present formidable challenges for modern Intrusion Detection Systems (IDS). While Graph Neural Networks (GNNs) excel in modeling topological…

Machine Learning · Computer Science 2026-04-15 Tianxiang Xu , Zhichao Wen , Xinyu Zhao , Qi Hu , Yan Li , Chang Liu

In computer graphics (CG) education, the challenge of finding modern, versatile tools is significant, particularly when integrating both legacy and advanced technologies. Traditional frameworks, often reliant on solid, yet outdated APIs…

Graphics · Computer Science 2024-09-26 John Petropoulos , Manos Kamarianakis , Antonis Protopsaltis , George Papagiannakis

Detecting vulnerabilities in source code is a critical task for software security assurance. Graph Neural Network (GNN) machine learning can be a promising approach by modeling source code as graphs. Early approaches treated code elements…

Cryptography and Security · Computer Science 2025-02-25 Yu Luo , Weifeng Xu , Dianxiang Xu

Reasoning over Temporal Knowledge Graphs (TKGs) aims to predict future facts based on given history. One of the key challenges for prediction is to learn the evolution of facts. Most existing works focus on exploring evolutionary…

Artificial Intelligence · Computer Science 2023-02-03 Yuwei Xia , Mengqi Zhang , Qiang Liu , Shu Wu , Xiao-Yu Zhang