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We introduce giotto-tda, a Python library that integrates high-performance topological data analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ implementations. The library's ability to handle various…

ImageJ is a graphical user interface (GUI) driven, public domain, Java-based, software package for general image processing traditionally used mainly in life sciences fields. The image processing capabilities of ImageJ are useful and…

Instrumentation and Methods for Astrophysics · Physics 2017-09-27 Karen A. Collins , John F. Kielkopf , Keivan G. Stassun , Frederic V. Hessman

The table analysis application TOPCAT uses a custom Java plotting library for highly configurable high-performance interactive or exported visualisations in two and three dimensions. We present here a variety of ways for end users or…

Instrumentation and Methods for Astrophysics · Physics 2014-10-31 M. B. Taylor

The Euclid Space Telescope will provide deep imaging at optical and near-infrared wavelengths, along with slitless near-infrared spectroscopy, across ~15,000 sq deg of the sky. Euclid is expected to detect ~12 billion astronomical sources,…

Instrumentation and Methods for Astrophysics · Physics 2023-03-15 Euclid Collaboration , A. Humphrey , L. Bisigello , P. A. C. Cunha , M. Bolzonella , S. Fotopoulou , K. Caputi , C. Tortora , G. Zamorani , P. Papaderos , D. Vergani , J. Brinchmann , M. Moresco , A. Amara , N. Auricchio , M. Baldi , R. Bender , D. Bonino , E. Branchini , M. Brescia , S. Camera , V. Capobianco , C. Carbone , J. Carretero , F. J. Castander , M. Castellano , S. Cavuoti , A. Cimatti , R. Cledassou , G. Congedo , C. J. Conselice , L. Conversi , Y. Copin , L. Corcione , F. Courbin , M. Cropper , A. Da Silva , H. Degaudenzi , M. Douspis , F. Dubath , C. A. J. Duncan , X. Dupac , S. Dusini , S. Farrens , S. Ferriol , M. Frailis , E. Franceschi , M. Fumana , P. Gomez-Alvarez , S. Galeotta , B. Garilli , W. Gillard , B. Gillis , C. Giocoli , A. Grazian , F. Grupp , L. Guzzo , S. V. H. Haugan , W. Holmes , F. Hormuth , K. Jahnke , M. Kummel , S. Kermiche , A. Kiessling , M. Kilbinger , T. Kitching , R. Kohley , M. Kunz , H. Kurki-Suonio , S. Ligori , P. B. Lilje , I. Lloro , E. Maiorano , O. Mansutti , O. Marggraf , K. Markovic , F. Marulli , R. Massey , S. Maurogordato , H. J. McCracken , E. Medinaceli , M. Melchior , M. Meneghetti , E. Merlin , G. Meylan , L. Moscardini , E. Munari , R. Nakajima , S. M. Niemi , J. Nightingale , C. Padilla , S. Paltani , F. Pasian , K. Pedersen , V. Pettorino , S. Pires , M. Poncet , L. Popa , L. Pozzetti , F. Raison , A. Renzi , J. Rhodes , G. Riccio , E. Romelli , M. Roncarelli , E. Rossetti , R. Saglia , D. Sapone , B. Sartoris , R. Scaramella , P. Schneider , M. Scodeggio , A. Secroun , G. Seidel , C. Sirignano , G. Sirri , L. Stanco , P. Tallada-Crespi , D. Tavagnacco , A. N. Taylor , I. Tereno , R. Toledo-Moreo , F. Torradeflot , I. Tutusaus , L. Valenziano , T. Vassallo , Y. Wang , J. Weller , A. Zacchei , J. Zoubian , S. Andreon , S. Bardelli , A. Boucaud , R. Farinelli , J. Gracia-Carpio , D. Maino , N. Mauri , S. Mei , N. Morisset , F. Sureau , M. Tenti , A. Tramacere , E. Zucca , C. Baccigalupi , A. Balaguera-Antolinez , A. Biviano , A. Blanchard , S. Borgani , E. Bozzo , C. Burigana , R. Cabanac , A. Cappi , C. S. Carvalho , S. Casas , G. Castignani , C. Colodro-Conde , A. R. Cooray , J. Coupon , H. M. Courtois , O. Cucciati , S. Davini , G. De Lucia , H. Dole , J. A. Escartin , S. Escoffier , M. Fabricius , M. Farina , F. Finelli , K. Ganga , J. Garcia-Bellido , K. George , F. Giacomini , G. Gozaliasl , I. Hook , M. Huertas-Company , B. Joachimi , V. Kansal , A. Kashlinsky , E. Keihanen , C. C. Kirkpatrick , V. Lindholm , G. Mainetti , R. Maoli , S. Marcin , M. Martinelli , N. Martinet , M. Maturi , R. B. Metcalf , G. Morgante , A. A. Nucita , L. Patrizii , A. Peel , J. E. Pollack , V. Popa , C. Porciani , D. Potter , P. Reimberg , A. G. Sanchez , M. Schirmer , M. Schultheis , V. Scottez , E. Sefusatti , J. Stadel , R. Teyssier , C. Valieri , J. Valiviita , M. Viel , F. Calura , H. Hildebrandt

Python is a particularly appealing language to carry out data analysis, owing in part to its user-friendly character as well as its access to well maintained and powerful libraries like NumPy and SciPy. Still, for the purpose of analyzing…

High Energy Physics - Lattice · Physics 2024-02-01 Luis Altenkort , David Anthony Clarke , Jishnu Goswami , Hauke Sandmeyer

Software documentation frequently becomes outdated or fails to exist entirely, yet developers need focused views of their codebase to understand complex systems. While automated reverse engineering tools can generate UML diagrams from code,…

Software Engineering · Computer Science 2026-04-28 Oleg Baryshnikov , Anton M. Alekseev , Sergey I. Nikolenko

Fully automated astronomical data calibration and imaging pipelines are difficult to develop without a good prototyping method which permits to bridge the time between observatory commissioning and the moment when the special features and…

Instrumentation and Methods for Astrophysics · Physics 2021-12-21 Dirk Petry

We introduce geoplotlib, an open-source python toolbox for visualizing geographical data. geoplotlib supports the development of hardware-accelerated interactive visualizations in pure python, and provides implementations of dot maps,…

Graphics · Computer Science 2016-08-08 Andrea Cuttone , Sune Lehmann , Jakob Eg Larsen

Data exploration is a challenging process in which users examine a dataset by iteratively employing a series of queries. While in some cases the user explores a new dataset to become familiar with it, more often, the exploration process is…

Databases · Computer Science 2024-06-10 Tavor Lipman , Tova Milo , Amit Somech , Tomer Wolfson , Oz Zafar

Given the complexity of underwater environments and the variability of water as a medium, underwater images are inevitably subject to various types of degradation. The degradations present nonlinear coupling rather than simple…

Computer Vision and Pattern Recognition · Computer Science 2025-12-24 Tao Ye , Hongbin Ren , Chongbing Zhang , Haoran Chen , Xiaosong Li

This paper proposes a simple, yet effective framework, called GiT, simultaneously applicable for various vision tasks only with a vanilla ViT. Motivated by the universality of the Multi-layer Transformer architecture (e.g, GPT) widely used…

Computer Vision and Pattern Recognition · Computer Science 2024-03-15 Haiyang Wang , Hao Tang , Li Jiang , Shaoshuai Shi , Muhammad Ferjad Naeem , Hongsheng Li , Bernt Schiele , Liwei Wang

We present our implementation of an automated VLBI data reduction pipeline dedicated to interferometric data imaging and analysis. The pipeline can handle massive VLBI data efficiently which makes it an appropriate tool to investigate…

Instrumentation and Methods for Astrophysics · Physics 2017-12-07 M. Zhang , A. Collioud , P. Charlot

We design the imaging data calibration and reduction software for MICADO, the First Light near-IR instrument on the Extremely Large Telescope. In this process we have hit the limit of what can be achieved with a detailed software design…

Instrumentation and Methods for Astrophysics · Physics 2020-11-10 Hugo Buddelmeijer , Gijs A. Verdoes Kleijn , Kieran Leschinski

We present an open-access natural language processing toolkit for Japanese medical information extraction. We first propose a novel relation annotation schema for investigating the medical and temporal relations between medical entities in…

Computation and Language · Computer Science 2021-11-09 Fei Cheng , Shuntaro Yada , Ribeka Tanaka , Eiji Aramaki , Sadao Kurohashi

Existing RDF serialization formats such as Turtle, N-Quads, and JSON-LD are widely used for communication and storage in knowledge graph and Semantic Web applications. However, they suffer from limitations in performance, compression ratio,…

Databases · Computer Science 2025-08-01 Piotr Sowinski , Karolina Bogacka , Anastasiya Danilenka , Nikita Kozlov

While natural language is commonly used to guide embodied agents, the inherent ambiguity and verbosity of language often hinder the effectiveness of language-guided navigation in complex environments. To this end, we propose Visual Prompt…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Shuo Feng , Zihan Wang , Yuchen Li , Rui Kong , Hengyi Cai , Shuaiqiang Wang , Gim Hee Lee , Piji Li , Shuqiang Jiang

JINet is a web browser-based platform intended to democratise access to advanced clinical and genomic data analysis software. It hosts numerous data analysis applications that are run in the safety of each User's web browser, without the…

Computers and Society · Computer Science 2024-08-30 Giada Lalli , James Collier , Yves Moreau , Daniele Raimondi

Processing high-throughput DNA sequencing data of individuals or populations requires stringing together independent software tools with many parameters, often leading to non-reproducible pipelines and datasets. We developed grenepipe to…

Genomics · Quantitative Biology 2025-01-09 Lucas Czech , Moises Exposito-Alonso

I present a graphical-user interface for performing several image operations on segmentation maps. The package is written entirely in IDL, and is provided as source code (for those who may want to develop, link to existing packages, or…

Instrumentation and Methods for Astrophysics · Physics 2018-08-15 R. E. Ryan