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We propose a segmentation framework that uses deep neural networks and introduce two innovations. First, we describe a biophysics-based domain adaptation method. Second, we propose an automatic method to segment white and gray matter, and…

Computer Vision and Pattern Recognition · Computer Science 2018-10-16 Amir Gholami , Shashank Subramanian , Varun Shenoy , Naveen Himthani , Xiangyu Yue , Sicheng Zhao , Peter Jin , George Biros , Kurt Keutzer

Glioblastoma is a highly malignant brain tumor with a life expectancy of only 3 to 6 months without treatment. Detecting and predicting its survival and grade accurately are crucial. This study introduces a novel approach using transfer…

Automatic brain tumor segmentation method plays an extremely important role in the whole process of brain tumor diagnosis and treatment. In this paper, we propose a multi-step cascaded network which takes the hierarchical topology of the…

Image and Video Processing · Electrical Eng. & Systems 2019-09-26 Xiangyu Li , Gongning Luo , Kuanquan Wang

Accurate segmentation of brain tumors in MRI scans is critical for clinical diagnosis and treatment planning. We propose a semi-supervised, two-stage framework that extends the ReCoSeg approach to the larger and more heterogeneous BraTS…

Image and Video Processing · Electrical Eng. & Systems 2025-08-05 Sara Yavari , Rahul Nitin Pandya , Jacob Furst

Uncertainty estimates of modern neuronal networks provide additional information next to the computed predictions and are thus expected to improve the understanding of the underlying model. Reliable uncertainties are particularly…

Computer Vision and Pattern Recognition · Computer Science 2018-06-11 Alain Jungo , Raphael Meier , Ekin Ermis , Evelyn Herrmann , Mauricio Reyes

We present a joint graph convolution-image convolution neural network as our submission to the Brain Tumor Segmentation (BraTS) 2021 challenge. We model each brain as a graph composed of distinct image regions, which is initially segmented…

Image and Video Processing · Electrical Eng. & Systems 2022-08-02 Camillo Saueressig , Adam Berkley , Reshma Munbodh , Ritambhara Singh

Fully convolutional neural networks have made promising progress in joint liver and liver tumor segmentation. Instead of following the debates over 2D versus 3D networks (for example, pursuing the balance between large-scale 2D pretraining…

Image and Video Processing · Electrical Eng. & Systems 2022-03-09 Shuxin Wang , Shilei Cao , Zhizhong Chai , Dong Wei , Kai Ma , Liansheng Wang , Yefeng Zheng

Accurate characterization of glioma is crucial for clinical decision making. A delineation of the tumor is also desirable in the initial decision stages but is a time-consuming task. Leveraging the latest GPU capabilities, we developed a…

In this paper, we use a fully convolutional neural network (FCNN) for the segmentation of gliomas from Magnetic Resonance Images (MRI). A fully automatic, voxel based classification was achieved by training a 23 layer deep FCNN on 2-D…

Computer Vision and Pattern Recognition · Computer Science 2017-12-07 Varghese Alex , Mohammed Safwan , Ganapathy Krishnamurthi

Glioblastoma is profoundly heterogeneous in microstructure and vasculature, which may lead to tumor regional diversity and distinct treatment response. Although successful in tumor sub-region segmentation and survival prediction, radiomics…

Image and Video Processing · Electrical Eng. & Systems 2021-09-30 Yifan Li , Chao Li , Stephen Price , Carola-Bibiane Schönlieb , Xi Chen

Deep neural networks are commonly used for automated medical image segmentation, but models will frequently struggle to generalize well across different imaging modalities. This issue is particularly problematic due to the limited…

Computer Vision and Pattern Recognition · Computer Science 2023-09-19 Malo de Boisredon , Eugene Vorontsov , William Trung Le , Samuel Kadoury

Glioblastoma (GBM) is the most common aggressive, fast-growing brain tumor, with a grim prognosis. Despite clinical diagnostic advancements, there have not been any substantial improvements to patient prognosis. Histopathological assessment…

Computer Vision and Pattern Recognition · Computer Science 2025-11-13 Sanyukta Adap , Ujjwal Baid , Spyridon Bakas

Detection of brain tumor using a segmentation based approach is critical in cases, where survival of a subject depends on an accurate and timely clinical diagnosis. Gliomas are the most commonly found tumors having irregular shape and…

Computer Vision and Pattern Recognition · Computer Science 2018-04-16 Saddam Hussain , Syed Muhammad Anwar , Muhammad Majid

In this paper, we propose a Hybrid High-resolution and Non-local Feature Network (H2NF-Net) to segment brain tumor in multimodal MR images. Our H2NF-Net uses the single and cascaded HNF-Nets to segment different brain tumor sub-regions and…

Image and Video Processing · Electrical Eng. & Systems 2021-01-01 Haozhe Jia , Weidong Cai , Heng Huang , Yong Xia

Accurate detection and segmentation of brain tumors is critical for medical diagnosis. However, current supervised learning methods require extensively annotated images and the state-of-the-art generative models used in unsupervised methods…

Image and Video Processing · Electrical Eng. & Systems 2023-11-07 Wenxin Wang , Zhuo-Xu Cui , Guanxun Cheng , Chentao Cao , Xi Xu , Ziwei Liu , Haifeng Wang , Yulong Qi , Dong Liang , Yanjie Zhu

Segmentation is a crucial task in the medical imaging field and is often an important primary step or even a prerequisite to the analysis of medical volumes. Yet treatments such as surgery complicate the accurate delineation of regions of…

Image and Video Processing · Electrical Eng. & Systems 2024-09-13 Heejong Kim , Leo Milecki , Mina C Moghadam , Fengbei Liu , Minh Nguyen , Eric Qiu , Abhishek Thanki , Mert R Sabuncu

Medical image foundation models have shown the ability to segment organs and tumors with minimal fine-tuning. These models are typically evaluated on task-specific in-distribution (ID) datasets. However, reliable performance on ID datasets…

Image and Video Processing · Electrical Eng. & Systems 2025-01-31 Aneesh Rangnekar , Nishant Nadkarni , Jue Jiang , Harini Veeraraghavan

Multimodal deep learning has improved prognostic accuracy for brain tumours by integrating histopathology and genomic data, yet the contribution of volumetric MRI within unified survival frameworks remains unexplored. This pilot study…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Iain Swift , JingHua Ye

Brain tumor segmentation (BTS) in magnetic resonance image (MRI) is crucial for brain tumor diagnosis, cancer management and research purposes. With the great success of the ten-year BraTS challenges as well as the advances of CNN and…

Image and Video Processing · Electrical Eng. & Systems 2022-07-18 Jianwei Lin , Jiatai Lin , Cheng Lu , Hao Chen , Huan Lin , Bingchao Zhao , Zhenwei Shi , Bingjiang Qiu , Xipeng Pan , Zeyan Xu , Biao Huang , Changhong Liang , Guoqiang Han , Zaiyi Liu , Chu Han

Glioblastoma brain tumors are highly malignant and often require early detection and accurate segmentation for effective treatment. We are proposing two deep learning models in this paper, namely UNet and Deeplabv3, for the detection and…

Image and Video Processing · Electrical Eng. & Systems 2024-09-02 Utkarsh Maurya , Appisetty Krishna Kalyan , Swapnil Bohidar , S. Sivakumar