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Nonlinear data visualization using t-distributed stochastic neighbor embedding (t-SNE) enables the representation of complex single-cell transcriptomic landscapes in two or three dimensions to depict biological populations accurately.…

Genomics · Quantitative Biology 2024-10-02 Hui Ma , Kai Chen

Modern datasets and models are notoriously difficult to explore and analyze due to their inherent high dimensionality and massive numbers of samples. Existing visualization methods which employ dimensionality reduction to two or three…

Machine Learning · Computer Science 2018-08-01 David M. Chan , Roshan Rao , Forrest Huang , John F. Canny

We train three convolutional neural networks (CNNs) to classify galaxies with Galaxy Zoo 2 dataset and extract the activations from the last fully connected layer or the last average pooling layer of CNNs to study the high-dimensional…

Astrophysics of Galaxies · Physics 2018-07-17 Jia-Ming Dai , Jizhou Tong

Interactive exploration of large, multidimensional datasets plays a very important role in various scientific fields. It makes it possible not only to identify important structural features and forms, such as clusters of vertices and their…

Machine Learning · Computer Science 2023-03-10 Bartosz Minch

Analysis of high dimensional data is a common task. Often, small multiples are used to visualize 1 or 2 dimensions at a time, such as in a scatterplot matrix. Associating data points between different views can be difficult though, as the…

Graphics · Computer Science 2014-08-05 Chris W. Muelder , Nick Leaf , Carmen Sigovan , Kwan-Liu Ma

We use graphical methods to probe neural nets that classify images. Plots of t-SNE outputs at successive layers in a network reveal increasingly organized arrangement of the data points. They can also reveal how a network can diminish or…

Machine Learning · Computer Science 2021-07-28 Christopher R. Hoyt , Art B. Owen

Different unsupervised models for dimensionality reduction like PCA, LLE, Shannon's mapping, tSNE, UMAP, etc. work on different principles, hence, they are difficult to compare on the same ground. Although they are usually good for…

Methodology · Statistics 2024-05-10 Subhrajyoty Roy

There has been an intense recent activity in embedding of very high dimensional and nonlinear data structures, much of it in the data science and machine learning literature. We survey this activity in four parts. In the first part we cover…

Machine Learning · Statistics 2022-09-01 Dag Tjøstheim , Martin Jullum , Anders Løland

Most Machine Learning (ML) methods, from clustering to classification, rely on a distance function to describe relationships between datapoints. For complex datasets it is hard to avoid making some arbitrary choices when defining a distance…

Machine Learning · Statistics 2016-07-04 Gina Gruenhage , Manfred Opper , Simon Barthelme

Dimension reduction, widely used in science, maps high-dimensional data into low-dimensional space. We investigate a basic mathematical model underlying the techniques of stochastic neighborhood embedding (SNE) and its popular variant…

Machine Learning · Statistics 2025-03-26 Ben Weinkove

Visualization plays a vital role in making sense of complex network data. Recent studies have shown the potential of using extended reality (XR) for the immersive exploration of networks. The additional depth cues offered by XR help users…

Human-Computer Interaction · Computer Science 2023-01-27 David Bauer , Chengbo Zheng , Oh-Hyun Kwon , Kwan-Liu Ma

The t-distributed Stochastic Neighbor Embedding (t-SNE) algorithm is a ubiquitously employed dimensionality reduction (DR) method. Its non-parametric nature and impressive efficacy motivated its parametric extension. It is however bounded…

Machine Learning · Computer Science 2020-10-06 Francesco Crecchi , Cyril de Bodt , Michel Verleysen , John A. Lee , Davide Bacciu

We present a new technique called "DSNE" which learns the velocity embeddings of low dimensional map points when given the high-dimensional data points with its velocities. The technique is a variation of Stochastic Neighbor Embedding,…

Machine Learning · Computer Science 2021-03-16 Songting Shi

As a hot research topic, many multi-view clustering approaches are proposed over the past few years. Nevertheless, most existing algorithms merely take the consensus information among different views into consideration for clustering.…

Machine Learning · Computer Science 2022-11-09 Qinghai Zheng , Yu Zhang , Jihua Zhu , Zhongyu Li , Haoyu Tang , Shuangxun Ma

In recent years, Multi-View Clustering (MVC) has attracted increasing attention for its potential to reduce the annotation burden associated with large datasets. The aim of MVC is to exploit the inherent consistency and complementarity…

Machine Learning · Computer Science 2024-07-12 Zhangci Xiong , Meng Cao

We present a neural-field-based large-scale reconstruction system that fuses lidar and vision data to generate high-quality reconstructions that are geometrically accurate and capture photo-realistic textures. This system adapts the…

Robotics · Computer Science 2025-02-18 Yifu Tao , Yash Bhalgat , Lanke Frank Tarimo Fu , Matias Mattamala , Nived Chebrolu , Maurice Fallon

We first show that the commonly used dimensionality reduction (DR) methods such as t-SNE and LargeVis poorly capture the global structure of the data in the low dimensional embedding. We show this via a number of tests for the DR methods…

Machine Learning · Computer Science 2018-03-05 Ehsan Amid , Manfred K. Warmuth

This paper introduces NN-STNE, a neural network using t-distributed stochastic neighbor embedding (t-SNE) as a hidden layer to reduce input dimensions by mapping long time-series data into shapelet membership probabilities. A Gaussian…

Machine Learning · Computer Science 2025-02-07 Zhicong Xian , Tabish Chaudhary , Jürgen Bock

Recent advances in machine learning allow us to analyze and describe the content of high-dimensional data like text, audio, images or other signals. In order to visualize that data in 2D or 3D, usually Dimensionality Reduction (DR)…

Computer Vision and Pattern Recognition · Computer Science 2018-11-26 Dimitris Spathis , Nikolaos Passalis , Anastasios Tefas

Manifold learning based methods have been widely used for non-linear dimensionality reduction (NLDR). However, in many practical settings, the need to process streaming data is a challenge for such methods, owing to the high computational…

Machine Learning · Statistics 2018-03-20 Suchismit Mahapatra , Varun Chandola