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Network inference is a major field of interest for the ecological community, especially in light of the high cost and difficulty of manual observation, and easy availability of remote, long term monitoring data. In addition, comparing…

Quantitative Methods · Quantitative Biology 2021-03-30 Anshuman Swain , Travis Byrum , Zhaoyi Zhuang , Luke Perry , Michael Lin , William Fagan

Background: Sustainable software engineering (SSE) means creating software in a way that meets present needs without undermining our collective capacity to meet our future needs. It is typically conceptualized as several intersecting…

Software Engineering · Computer Science 2024-04-02 Sean McGuire , Erin Shultz , Bimpe Ayoola , Paul Ralph

We present RKappa, a framework for the development and analysis of rule-based models within a mature, statistically empowered R environment. The infrastructure allows model editing, modification, parameter sampling, simulation, statistical…

Molecular Networks · Quantitative Biology 2014-12-16 Anatoly Sorokin , Oksana Sorokina , J. Douglas Armstrong

Design patterns are elegant and well-tested solutions to recurrent software development problems. They are the result of software developers dealing with problems that frequently occur, solving them in the same or a slightly adapted way. A…

Software Engineering · Computer Science 2019-03-25 Hannes Thaller , Lukas Linsbauer , Alexander Egyed

We view Digital Ecosystems to be the digital counterparts of biological ecosystems. Here, we are concerned with the creation of these Digital Ecosystems, exploiting the self-organising properties of biological ecosystems to evolve…

Networking and Internet Architecture · Computer Science 2011-12-02 Gerard Briscoe , Suzanne Sadedin , Philippe De Wilde

Materials science is becoming increasingly more reliant on digital data to facilitate progress in the field. Due to a large diversity in its scope, breadth, and depth, organizing the data in a standard way to optimize the speed and creative…

Materials Science · Physics 2019-03-01 Timur Bazhirov

Research software plays a crucial role in advancing scientific knowledge, but ensuring its sustainability, maintainability, and long-term viability is an ongoing challenge. To address these concerns, the Sustainable Research Software…

Open source software development, particularly within institutions such as universities and research laboratories, is often decentralized and difficult to track. Although academic teams produce many impactful scientific tools, their…

Software Engineering · Computer Science 2026-02-27 Juanita Gomez , Emily Lovell , Stephanie Lieggi , Alvaro A. Cardenas , James Davis

Sustainability is an increasingly-studied topic in software engineering in general, and in software architecture in particular. There are already a number of secondary studies addressing sustainability in software engineering, but no such…

Software Engineering · Computer Science 2022-04-26 Vasilios Andrikopoulos , Rares-Dorian Boza , Carlos Perales , Patricia Lago

Ecosystems monitoring is essential to properly understand their development and the effects of events, both climatological and anthropological in nature. The amount of data used in these assessments is increasing at very high rates. This is…

Networking and Internet Architecture · Computer Science 2011-07-01 Gilberto Z. Pastorello , G. Arturo Sanchez-Azofeifa , Mario A. Nascimento

Science depends on collaboration, result reproduction, and the development of supporting software tools. Each of these requires careful management of software versions. We present a unified model for installing, managing, and publishing…

Computation · Statistics 2015-01-15 Gabriel Becker , Cory Barr , Robert Gentleman , Michael Lawrence

The unprecedented size of the human population, along with its associated economic activities, have an ever increasing impact on global environments. Across the world, countries are concerned about the growing resource consumption and the…

Context: Behaviour Driven Development (BDD) uses scenarios written in semi-structured natural language to express software requirements in a way that can be understood by all stakeholders. The resulting natural language specifications can…

Software Engineering · Computer Science 2023-05-10 Leonard Peter Binamungu , Salome Maro

Scientific software projects evolve rapidly in their initial development phase, yet at the end of a funding period, the completion of a research project, thesis, or publication, further engagement in the project may slow down or cease…

General Literature · Computer Science 2021-05-10 Jörg Fehr , Christian Himpe , Stephan Rave , Jens Saak

Research software -- specialist software used to support or undertake research -- is of huge importance to researchers. It contributes to significant advances in the wider world and requires collaboration between people with diverse skills…

Software Engineering · Computer Science 2021-06-22 Neil P. Chue Hong , Jeremy Cohen , Caroline Jay

As our lives, our businesses, and indeed our world economy become increasingly reliant on the secure operation of many interconnected software systems, the software engineering research community is faced with unprecedented research…

Software Engineering · Computer Science 2024-09-27 Marcel Böhme , Eric Bodden , Tevfik Bultan , Cristian Cadar , Yang Liu , Giuseppe Scanniello

Open source software ecosystems consist of thousands of interdependent libraries, which users can combine to great effect. Recent work has pointed out two kinds of risks in these systems: that technical problems like bugs and…

Software Engineering · Computer Science 2022-05-11 William Schueller , Johannes Wachs

In Open Source Software, the source code and any other resources available in a project can be viewed or reused by anyone subject to often permissive licensing restrictions. In contrast to some studies of dependency-based reuse supported…

Software Engineering · Computer Science 2024-02-12 Mahmoud Jahanshahi , Audris Mockus

Context: The software development industry is rapidly adopting machine learning for transitioning modern day software systems towards highly intelligent and self-learning systems. However, the full potential of machine learning for…

Software Engineering · Computer Science 2021-10-18 Saad Shafiq , Atif Mashkoor , Christoph Mayr-Dorn , Alexander Egyed

Enabling observability in software systems brings many benefits. It can, for example, ease the identification of issues or the implementation of improvements. It is especially critical to be able to observe sustainability-related dimensions…

Software Engineering · Computer Science 2026-04-13 Klervie Toczé , Andrei Dragomir , Vincenzo Stoico , Patricia Lago
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