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Neural embedding-based machine learning models have shown promise for predicting novel links in knowledge graphs. Unfortunately, their practical utility is diminished by their lack of interpretability. Recently, the fully interpretable,…

Artificial Intelligence · Computer Science 2021-11-23 Simon Ott , Christian Meilicke , Matthias Samwald

Most of todays work on knowledge graph completion is concerned with sub-symbolic approaches that focus on the concept of embedding a given graph in a low dimensional vector space. Against this trend, we propose an approach called AnyBURL…

Artificial Intelligence · Computer Science 2020-04-10 Christian Meilicke , Melisachew Wudage Chekol , Manuel Fink , Heiner Stuckenschmidt

Rule mining on knowledge graphs allows for explainable link prediction. Contrarily, embedding-based methods for link prediction are well known for their generalization capabilities, but their predictions are not interpretable. Several…

Artificial Intelligence · Computer Science 2024-06-17 N'Dah Jean Kouagou , Arif Yilmaz , Michel Dumontier , Axel-Cyrille Ngonga Ngomo

Given the ubiquitous existence of graph-structured data, learning the representations of nodes for the downstream tasks ranging from node classification, link prediction to graph classification is of crucial importance. Regarding missing…

Machine Learning · Computer Science 2022-04-21 Bisheng Li , Min Zhou , Shengzhong Zhang , Menglin Yang , Defu Lian , Zengfeng Huang

SUMMARY: Recently, novel machine-learning algorithms have shown potential for predicting undiscovered links in biomedical knowledge networks. However, dedicated benchmarks for measuring algorithmic progress have not yet emerged. With…

Artificial Intelligence · Computer Science 2022-04-06 Anna Breit , Simon Ott , Asan Agibetov , Matthias Samwald

Deep learning models have achieved state-of-the-art performance in many classification tasks. However, most of them cannot provide an interpretation for their classification results. Machine learning models that are interpretable are…

Machine Learning · Computer Science 2021-11-04 Miles Q. Li , Benjamin C. M. Fung , Adel Abusitta

Knowledge graph completion aims to predict the new links in given entities among the knowledge graph (KG). Most mainstream embedding methods focus on fact triplets contained in the given KG, however, ignoring the rich background information…

Artificial Intelligence · Computer Science 2020-10-13 Zhaochong An , Bozhou Chen , Houde Quan , Qihui Lin , Hongzhi Wang

Rule-based methods for knowledge graph completion provide explainable results but often require a significantly large number of rules to achieve competitive performance. This can hinder explainability due to overwhelmingly large rule sets.…

Artificial Intelligence · Computer Science 2025-08-12 Jaikrishna Manojkumar Patil , Nathaniel Lee , Al Mehdi Saadat Chowdhury , YooJung Choi , Paulo Shakarian

Interpretability has become a necessary feature for machine learning models deployed in critical scenarios, e.g. legal system, healthcare. In these situations, algorithmic decisions may have (potentially negative) long-lasting effects on…

Machine Learning · Computer Science 2021-12-21 An-phi Nguyen , Maria Rodriguez Martinez

Knowledge graph completion (a.k.a.~link prediction), i.e.,~the task of inferring missing information from knowledge graphs, is a widely used task in many applications, such as product recommendation and question answering. The…

Artificial Intelligence · Computer Science 2022-07-05 Zoi Kaoudi , Abelardo Carlos Martinez Lorenzo , Volker Markl

Knowledge graph embedding models have gained significant attention in AI research. Recent works have shown that the inclusion of background knowledge, such as logical rules, can improve the performance of embeddings in downstream machine…

Artificial Intelligence · Computer Science 2019-08-21 Mojtaba Nayyeri , Chengjin Xu , Jens Lehmann , Hamed Shariat Yazdi

Discovering interpretable patterns for classification of sequential data is of key importance for a variety of fields, ranging from genomics to fraud detection or more generally interpretable decision-making. In this paper, we propose a…

Machine Learning · Computer Science 2023-02-23 Marine Collery , Philippe Bonnard , François Fages , Remy Kusters

In domains where transparency and trustworthiness are crucial, such as healthcare, rule-based systems are widely used and often preferred over black-box models for decision support systems due to their inherent interpretability. However, as…

Machine Learning · Computer Science 2025-06-18 Christel Sirocchi , Damiano Verda

Many machine learning tasks can benefit from external knowledge. Large knowledge graphs store such knowledge, and embedding methods can be used to distill it into ready-to-use vector representations for downstream applications. For this…

Machine Learning · Computer Science 2026-03-18 Félix Lefebvre , Gaël Varoquaux

Learning interpretable models has become a major focus of machine learning research, given the increasing prominence of machine learning in socially important decision-making. Among interpretable models, rule lists are among the best-known…

Machine Learning · Computer Science 2024-06-19 Leonardo Pellegrina , Fabio Vandin

Reasoning is essential for the development of large knowledge graphs, especially for completion, which aims to infer new triples based on existing ones. Both rules and embeddings can be used for knowledge graph reasoning and they have their…

Artificial Intelligence · Computer Science 2019-03-22 Wen Zhang , Bibek Paudel , Liang Wang , Jiaoyan Chen , Hai Zhu , Wei Zhang , Abraham Bernstein , Huajun Chen

Recent advancements in machine learning (ML) are transforming the field of structural biology. For example, AlphaFold, a groundbreaking neural network for protein structure prediction, has been widely adopted by researchers. The…

Rule-based models, e.g., decision trees, are widely used in scenarios demanding high model interpretability for their transparent inner structures and good model expressivity. However, rule-based models are hard to optimize, especially on…

Machine Learning · Computer Science 2021-10-01 Zhuo Wang , Wei Zhang , Ning Liu , Jianyong Wang

Rule-based models, e.g., decision trees, are widely used in scenarios demanding high model interpretability for their transparent inner structures and good model expressivity. However, rule-based models are hard to optimize, especially on…

Machine Learning · Computer Science 2024-01-31 Zhuo Wang , Wei Zhang , Ning Liu , Jianyong Wang

While deep learning has achieved great success in many fields, one common criticism about deep learning is its lack of interpretability. In most cases, the hidden units in a deep neural network do not have a clear semantic meaning or…

Genomics · Quantitative Biology 2019-06-04 Tianle Ma , Aidong Zhang
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