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In this work, we examine a novel forecasting approach for COVID-19 case prediction that uses Graph Neural Networks and mobility data. In contrast to existing time series forecasting models, the proposed approach learns from a single…

Machine Learning · Computer Science 2020-07-08 Amol Kapoor , Xue Ben , Luyang Liu , Bryan Perozzi , Matt Barnes , Martin Blais , Shawn O'Banion

The COVID-19 pandemic has exerted a profound impact on the global economy and continues to exact a significant toll on human lives. The COVID-19 case growth rate stands as a key epidemiological parameter to estimate and monitor for…

Machine Learning · Statistics 2026-05-14 Zhaowei She , Zilong Wang , Jagpreet Chhatwal , Turgay Ayer

In this article, we have proposed an epidemic model by using probability cellular automata theory. The essential mathematical features are analyzed with the help of stability theory. We have given an alternative modelling approach for the…

Cellular Automata and Lattice Gases · Physics 2009-05-30 Jin Zhen , Liu Quanxing , Mainul Haque

We propose a combined model, which integrates the latent factor model and the logistic regression model, for the citation network. It is noticed that neither a latent factor model nor a logistic regression model alone is sufficient to…

Machine Learning · Statistics 2019-12-03 Namjoon Suh , Xiaoming Huo , Eric Heim , Lee Seversky

Humans learn from the occurrence of events in a different place and time to predict similar trajectories of events. We define Loosely Decoupled Timeseries (LDT) phenomena as two or more events that could happen in different places and…

Machine Learning · Computer Science 2022-08-29 Christian Manasseh , Razvan Veliche , Jared Bennett , Hamilton Clouse

Motivated by Tucker tensor decomposition, this paper imposes low-rank structures to the column and row spaces of coefficient matrices in a multivariate infinite-order vector autoregression (VAR), which leads to a supervised factor model…

Methodology · Statistics 2023-12-04 Feiqing Huang , Kexin Lu , Guodong Li

The SIR model is a classical model characterizing the spreading of infectious diseases. This model describes the time-dependent quantity changes among Susceptible, Infectious, and Recovered groups. By introducing space-depend effects such…

Quantitative Methods · Quantitative Biology 2024-09-18 Md Abu Talha , Yongjia Xu , Shan Zhao , Weihua Geng

Applying a ML approach to the temporal variability of the Spike protein sequence enables us to identify, classify and track emerging virus variants. Our analysis is unbiased, in the sense that it does not require any prior knowledge of the…

We propose an SEIR-type meta-population model to simulate and monitor the Covid-19 epidemic evolution. The basic model consists of seven compartments, namely susceptible (S), exposed (E), three infective classes, recovered (R), and deceased…

Populations and Evolution · Quantitative Biology 2020-11-18 Vinicius V. L. Albani , Roberto M. Velho , Jorge P. Zubelli

Understanding the spread of COVID-19 has been the subject of numerous studies, highlighting the significance of reliable epidemic models. Here, we introduce a novel epidemic model using a latent Hawkes process with temporal covariates for…

Methodology · Statistics 2022-08-16 Stamatina Lamprinakou , Axel Gandy , Emma McCoy

In this paper, we present our work on clustering and prediction of temporal dynamics of global congestion configurations in large-scale road networks. Instead of looking into temporal traffic state variation of individual links, or of small…

Machine Learning · Computer Science 2012-12-20 Yufei Han , Fabien Moutarde

In this paper, we propose a deep generative time series approach using latent temporal processes for modeling and holistically analyzing complex disease trajectories. We aim to find meaningful temporal latent representations of an…

In the recent COVID-19 pandemic we assisted at a sequence of epidemic waves intertwined by anomalous fade-outs with periods of low but persistent epidemic prevalence. These long-living epidemic states complicate epidemic control and…

Physics and Society · Physics 2025-08-27 Javier Aguilar , Beatriz Arregui García , Raúl Toral , Sandro Meloni , Jose J. Ramasco

This paper proposes a method for long-term action anticipation (LTA), the task of predicting action labels and their duration in a video given the observation of an initial untrimmed video interval. We build on an encoder-decoder…

Computer Vision and Pattern Recognition · Computer Science 2024-12-30 Alberto Maté , Mariella Dimiccoli

Summary: We present needLR, a structural variant (SV) annotation tool that can be used for filtering and prioritization of candidate pathogenic SVs from long-read sequencing data using population allele frequencies, annotations for genomic…

Genomics · Quantitative Biology 2025-12-10 Jonas A. Gustafson , Jiadong Lin , Evan E. Eichler , Danny E. Miller

Coronavirus COVID-19 spreads through the population mostly based on social contact. To gauge the potential for widespread contagion, to cope with associated uncertainty and to inform its mitigation, more accurate and robust modelling is…

Accurate traffic prediction is crucial to the guidance and management of urban traffics. However, most of the existing traffic prediction models do not consider the computational burden and memory space when they capture spatial-temporal…

Machine Learning · Computer Science 2021-03-11 Xuran Xu , Tong Zhang , Chunyan Xu , Zhen Cui , Jian Yang

Genetic pathways usually encode molecular mechanisms that can inform targeted interventions. It is often challenging for existing machine learning approaches to jointly model genetic pathways (higher-order features) and variants (atomic…

Quantitative Methods · Quantitative Biology 2021-11-19 Yuan Luo , Chengsheng Mao

Residual error propagation remains a fundamental problem in recurrent models, where small prediction inaccuracies compound over time and degrade long-horizon performance. Accurately modeling the correlation structure of such residuals is…

Machine Learning · Computer Science 2026-05-19 Seyed Mohamad Moghadas , Esther Rodrigo Bonet , Bruno Cornelis , Adrian Munteanu

This paper develops an individual-based stochastic network SIR model for the empirical analysis of the Covid-19 pandemic. It derives moment conditions for the number of infected and active cases for single as well as multigroup epidemic…

Econometrics · Economics 2022-01-05 M. Hashem Pesaran , Cynthia Fan Yang