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Understanding the contact dynamics of nonspherical particles beyond the microscale is crucial for accurately modeling colloidal and granular systems, where shape anisotropy dictates structural organization and transport properties. In this…

Soft Condensed Matter · Physics 2026-03-06 Haoyuan Shi , Christopher J. Mundy , Gregory K. Schenter , Jaehun Chun

Computational antibody CDR design methods condition on antigen structure to generate binding loops, yet existing architectures conflate two fundamentally distinct sub-problems: identifying which CDR positions will contact the antigen, and…

Machine Learning · Computer Science 2026-05-22 Mansoor Ahmed , Spencer VonBank , Nadeem Taj , Sujin Lee , Naila Jan , Murray Patterson

A reliable prediction of 3D protein structures from sequence data remains a big challenge due to both theoretical and computational difficulties. We have previously shown that our kinetostatic compliance method (KCM) implemented into the…

Computational Engineering, Finance, and Science · Computer Science 2017-12-27 Pouya Tavousi , Morad Behandish , Horea T. Ilies , Kazem Kazerounian

Probabilistic collision detection (PCD) is essential in motion planning for robots operating in unstructured environments, where considering sensing uncertainty helps prevent damage. Existing PCD methods mainly used simplified geometric…

Robotics · Computer Science 2025-08-28 Xiaoli Wang , Sipu Ruan , Xin Meng , Gregory Chirikjian

We study the mechanical contact between a deformable body with a wavy surface and a rigid flat taking into account pressurized fluid trapped in the interface. A finite element model is formulated for a general problem of trapped fluid for…

Fluid Dynamics · Physics 2021-03-23 Andrei G. Shvarts , Vladislav A. Yastrebov

The IP-Glasma initial condition has been highly successful in the phenomenology of ultra-relativistic heavy ion collisions. The assumption of boost invariance, however, while good for collision energies probed at the LHC, limits the use of…

High Energy Physics - Phenomenology · Physics 2023-06-09 Scott McDonald , Sangyong Jeon , Charles Gale

This paper presents a framework for abstracting uncertain or non-polynomial components of dynamical systems using polynomial constraints. This enables the application of polynomial-based analysis tools, such as sum-of-squares programming,…

Systems and Control · Electrical Eng. & Systems 2026-04-02 Neelay Junnarkar , Peter Seiler , Murat Arcak

In the framework of the recently developed asymptotic models for tibio-femoral contact incorporating frictionless elliptical contact interaction between thin elastic, viscoelastic, or biphasic cartilage layers, we apply an asymptotic…

Analysis of PDEs · Mathematics 2012-05-08 Ivan Argatov

After the recent ground-breaking advances in protein structure prediction, one of the remaining challenges in protein machine learning is to reliably predict distributions of structural states. Parametric models of fluctuations are…

Machine Learning · Computer Science 2024-01-25 Marloes Arts , Jes Frellsen , Wouter Boomsma

The simulation of multi-body systems with frictional contacts is a fundamental tool for many fields, such as robotics, computer graphics, and mechanics. Hard frictional contacts are particularly troublesome to simulate because they make the…

Robotics · Computer Science 2022-04-19 Bilal Hammoud , Luca Olivieri , Ludovic Righetti , Justin Carpentier , Andrea Del Prete

This work begins by applying peridynamics and phase-field modeling to predict 1-d interface motion with inertia in an elastic solid with a non-monotone stress-strain response. In classical nonlinear elasticity, it is known that subsonic…

Analysis of PDEs · Mathematics 2021-11-24 Janel Chua , Vaibhav Agrawal , Timothy Breitzman , George Gazonas , Kaushik Dayal

This paper presents a topology optimization approach to design 2D contact-aided compliant mechanisms (CCMs) that can trace the desired output paths with more than one kink while experiencing self and/or external contacts. Such CCMs can be…

Computational Engineering, Finance, and Science · Computer Science 2025-02-04 Prabhat Kumar , Roger A Sauer , Anupam Saxena

The constitutive relation of the quasi-static deformation on two dimensional packed samples of polygons is calculated using molecular dynamic simulations. The stress values at which the system remains stable are bounded by a failure…

Materials Science · Physics 2007-05-23 F. Alonso-Marroquin , H. J. Herrmann

We introduce a phase-field method for continuous modeling of cracks with frictional contacts. Compared with standard discrete methods for frictional contacts, the phase-field method has two attractive features: (1) it can represent…

Numerical Analysis · Mathematics 2020-01-29 Fan Fei , Jinhyun Choo

We extend the classical Gouy-Chapman model of two planar parallel interacting double-layers, which is used as a first approximation to describe the force between colloidal particles, by considering the finite-thickness of the colloids. The…

Soft Condensed Matter · Physics 2007-05-23 Aldemar Torres , Rene van Roij , Gabriel Tellez

Soft interfaces formed by lipid membranes are fundamental to living cells, synthetic cells, and membrane-based soft materials. However, a quantitative framework linking molecular organization with nonlinear interfacial mechanics remains…

Soft Condensed Matter · Physics 2026-01-27 Kazutoshi Masuda , Miho Yanagisawa

Model Predictive Control (MPC) is a popular strategy for controlling robots but is difficult for systems with contact due to the complex nature of hybrid dynamics. To implement MPC for systems with contact, dynamic models are often…

Robotics · Computer Science 2023-11-08 Nathan J. Kong , Chuanzheng Li , Aaron M. Johnson

Dual-continuum (DC) models can be tractable alternatives to explicit approaches for the numerical modelling of multiscale materials with multiphysics behaviours. This work concerns the conceptual and numerical modelling of poroelastically…

Geophysics · Physics 2020-12-02 Mark Ashworth , Florian Doster

This paper presents a method for the optimization of multi-component structures comprised of two and three materials considering large motion sliding contact and separation along interfaces. The structural geometry is defined by an explicit…

Optimization and Control · Mathematics 2017-01-24 Matthew Lawry , Kurt Maute

We consider a family of linearly elastic shells with thickness $2\varepsilon$ (where $\varepsilon$ is a small parameter). The shells are clamped along a portion of their lateral face, all having the same middle surface $S$, and may enter in…

Mathematical Physics · Physics 2016-11-23 Á. Rodríguez-Arós
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