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Ecosystems often undergo abrupt regime shifts in response to gradual external changes. These shifts are theoretically understood as a regime switch between alternative stable states of the ecosystem dynamical response to smooth changes in…

Populations and Evolution · Quantitative Biology 2015-02-18 Jose A. Capitan , Jose A. Cuesta

The composition of ecological communities varies not only between different locations but also in time. Understanding the fundamental processes that drive species towards rarity or abundance is crucial to assessing ecosystem resilience and…

Populations and Evolution · Quantitative Biology 2024-11-22 Emil Mallmin , Arne Traulsen , Silvia De Monte

The combined effect of tidal forcing and aquifer heterogeneity leads to intricate transport patterns in coastal aquifers that impact both on solute residence times and mixing dynamics. We study these patterns through detailed numerical…

Fluid Dynamics · Physics 2025-03-05 Satoshi Tajima , Marco Dentz

Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

Biological Physics · Physics 2023-11-23 Ikumi Kobayashi

Critical transitions describe sudden changes in the state of an ecosystem. In classical bifurcation theory, such transitions occur when the value of a parameter exceeds a threshold (``bifurcation") value. More recently, critical transitions…

Dynamical Systems · Mathematics 2026-05-25 Irakli Antidze , Brian Hennessy , Nikola Popovic , Zak Sattar

Critical transitions or regime shifts are sudden and unexpected changes in the state of an ecosystem, that are usually associated with dangerous levels of environmental change. However, recent studies show that critical transitions can also…

Populations and Evolution · Quantitative Biology 2019-08-16 Anna Vanselow , Sebastian Wieczorek , Ulrike Feudel

A fundamental goal of microbial ecology is to understand what determines the diversity, stability, and structure of microbial ecosystems. The microbial context poses special conceptual challenges because of the strong mutual influences…

Biological Physics · Physics 2019-03-06 Robert Marsland , Wenping Cui , Joshua Goldford , Alvaro Sanchez , Kirill Korolev , Pankaj Mehta

Pigmentation abnormalities, ranging from hypo- to hyperpigmentation, can serve as biomarkers of developmental disruption in fish exposed to environmental contaminants. However, the mechanistic pathways underlying these alterations remain…

Quantitative Methods · Quantitative Biology 2026-01-21 Pranali Roy Chowdhury , Tian Xu Wang , Abbey MacDonald , Keith B. Tierney , Hao Wang

Rapid anthropogenic environmental changes, including those due to habitat contamination, degradation, and climate change, have far-reaching effects on biological systems that may outpace animals' adaptive responses (Radchuk et al., 2019).…

Neurons and Cognition · Quantitative Biology 2022-10-17 Angie Michaiel , Amy Bernard

Global environmental change is pushing many socio-environmental systems towards critical thresholds, where ecological systems' states are on the precipice of tipping points and interventions are needed to navigate or avert impending…

Theoretical Economics · Economics 2024-04-23 Andrew R. Tilman , Elisabeth H. Krueger , Lisa C. McManus , James R. Watson

Ecosystems can undergo sudden shifts to undesirable states, but recent studies with simple single species ecosystems have demonstrated that advance warning can be provided by the slowing down of population dynamics near a tipping point.…

Populations and Evolution · Quantitative Biology 2015-06-16 Andrew Chen , Alvaro Sanchez , Lei Dai , Jeff Gore

In ecology, climate and other fields, (sub)systems have been identified that can transition into a qualitatively different state when a critical threshold or tipping point in a driving process is crossed. An understanding of those tipping…

Geophysics · Physics 2020-09-16 Ann Kristin Klose , Volker Karle , Ricarda Winkelmann , Jonathan F. Donges

Gradual changes in exploitation, nutrient loading, etc. produce shifts between alternative stable states (ASS) in ecosystems which, quite often, are not smooth but abrupt or catastrophic. Early warnings of such catastrophic regime shifts…

Populations and Evolution · Quantitative Biology 2009-10-07 Ariel Fernandez , Hugo Fort

We analyze the joint effect of contaminants and nutrient loading on population dynamics of marine food chains by means of bifurcation analysis. Contaminant toxicity is assumed to alter mortality of some species with a sigmoidal…

Populations and Evolution · Quantitative Biology 2009-02-20 Flora S. Bacelar , Sibylle Dueri , Emilio Hernandez-Garcia , Jose-Manuel Zaldivar

A cyclically dominating three-species ecosystem, modeled within the framework of rock-paper-scissor game, is studied in presence of natural death and an effect of the environment. The environmental impact is parameterized along with the…

Statistical Mechanics · Physics 2024-03-11 Sirshendu Bhattacharyya

The history of the Earth has been marked by major ecological transitions, driven by metabolic innovation, that radically reshaped the composition of the oceans and atmosphere. The nature and magnitude of the earliest transitions, hundreds…

Populations and Evolution · Quantitative Biology 2020-06-12 Boris Sauterey , Benjamin Charnay , Antonin Affholder , Stéphane Mazevet , Régis Ferrière

In the marine environment biological processes are strongly affected by oceanic currents, particularly by eddies (vortices) formed by the hydrodynamic flow field. Employing a kinematic flow field coupled to a population dynamical model for…

Populations and Evolution · Quantitative Biology 2019-05-07 Ksenia Guseva , Ulrike Feudel

Coastal ecosystems are increasingly experiencing anthropogenic pressures such as climate heating, CO2 increase, metal and organic pollution, overfishing and resource extraction. Some resulting stressors are more direct like fisheries,…

Stochastic chemical reaction or population dynamics in finite systems often terminates in an absorbing state. Yet in large spatially extended systems, the time to reach species extinction (or fixation) becomes exceedingly long. Tuning…

Populations and Evolution · Quantitative Biology 2025-11-17 Kenneth A. V. Distefano , Sara Shabani , Uwe C. Täuber

A great number of biological organisms live in aqueous environments. Major evolutionary transitions, including the emergence of life itself, likely occurred in such environments. While the chemical aspects of the role of water in biology…

Populations and Evolution · Quantitative Biology 2020-07-01 Madison S. Krieger , Sam Sinai , Martin A. Nowak
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