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Single-cell RNA sequencing (scRNA-seq) is powerful technology that allows researchers to understand gene expression patterns at the single-cell level. However, analysing scRNA-seq data is challenging due to issues and biases in data…

Genomics · Quantitative Biology 2023-12-14 Jinlu Liu , Sara Wade , Natalia Bochkina

Near neighbor search (NNS) is a powerful abstraction for data access; however, data indexing is troublesome even for approximate indexes. For intrinsically high-dimensional data, high-quality fast searches demand either indexes with…

Data Structures and Algorithms · Computer Science 2021-06-30 Eric S. Tellez , Guillermo Ruiz , Edgar Chavez , Mario Graff

This paper presents a new similarity measure to be used for general tasks including supervised learning, which is represented by the K-nearest neighbor classifier (KNN). The proposed similarity measure is invariant to large differences in…

Machine Learning · Computer Science 2014-09-04 Ahmad Basheer Hassanat

k-Nearest Neighbors is one of the most fundamental but effective classification models. In this paper, we propose two families of models built on a sequence to sequence model and a memory network model to mimic the k-Nearest Neighbors…

Machine Learning · Computer Science 2019-11-28 Yiming Xu , Diego Klabjan

Background: Since the invention of next-generation RNA sequencing (RNA-seq) technologies, they have become a powerful tool to study the presence and quantity of RNA molecules in biological samples and have revolutionized transcriptomic…

Genomics · Quantitative Biology 2021-12-01 Wei Vivian Li , Jingyi Jessica Li

Approximate nearest neighbor (ANN) search is a fundamental problem in many areas of data mining, machine learning and computer vision. The performance of traditional hierarchical structure (tree) based methods decreases as the…

Computer Vision and Pattern Recognition · Computer Science 2016-12-06 Cong Fu , Deng Cai

The problem of supervised classification (or discrimination) with functional data is considered, with a special interest on the popular k-nearest neighbors (k-NN) classifier. First, relying on a recent result by Cerou and Guyader (2006), we…

Machine Learning · Statistics 2008-06-18 Amparo Baillo , Antonio Cuevas

Single-cell RNA sequencing (scRNA-seq) is widely used to reveal heterogeneity in cells, which has given us insights into cell-cell communication, cell differentiation, and differential gene expression. However, analyzing scRNA-seq data is a…

Quantitative Methods · Quantitative Biology 2023-10-24 Sean Cottrell , Yuta Hozumi , Guo-Wei Wei

The reverse k-nearest neighbor (RkNN) query is an established query type with various applications reaching from identifying highly influential objects over incrementally updating kNN graphs to optimizing sensor communication and outlier…

Databases · Computer Science 2020-11-04 Sandra Obermeier , Max Berrendorf , Peer Kröger

With the large and increasing volume of textual data, automated methods for identifying significant topics to classify textual documents have received a growing interest. While many efforts have been made in this direction, it still remains…

Information Retrieval · Computer Science 2016-06-10 Khadim Dramé , Fleur Mougin , Gayo Diallo

$k$ Nearest Neighbors ($k$NN) is one of the most widely used supervised learning algorithms to classify Gaussian distributed data, but it does not achieve good results when it is applied to nonlinear manifold distributed data, especially…

Machine Learning · Computer Science 2016-06-06 Enmei Tu , Yaqian Zhang , Lin Zhu , Jie Yang , Nikola Kasabov

The k-nearest neighbors (k-NN) classification rule has proven extremely successful in countless many computer vision applications. For example, image categorization often relies on uniform voting among the nearest prototypes in the space of…

Computer Vision and Pattern Recognition · Computer Science 2010-01-11 Paolo Piro , Richard Nock , Frank Nielsen , Michel Barlaud

Reverse k nearest neighbor (RkNN) queries are fundamental in spatial databases, location-based analytics, and recommendation systems. Existing state-of-the-art techniques rely on spatial pruning supported by R-trees and their variants.…

Databases · Computer Science 2026-05-27 Zhengyang Bai , Peng Chen , Mohamed Wahib

Approximate nearest neighbor (ANN) search is a key component in many modern machine learning pipelines; recent use cases include retrieval-augmented generation (RAG) and vector databases. Clustering-based ANN algorithms, that use score…

Machine Learning · Computer Science 2024-10-25 Elias Jääsaari , Ville Hyvönen , Teemu Roos

High-dimensional approximate $K$ nearest neighbor search (AKNN) is a fundamental task for various applications, including information retrieval. Most existing algorithms for AKNN can be decomposed into two main components, i.e., candidate…

Databases · Computer Science 2024-12-03 Liwei Deng , Penghao Chen , Ximu Zeng , Tianfu Wang , Yan Zhao , Kai Zheng

This paper presents a novel quantum K-nearest neighbors (QKNN) algorithm, which offers improved performance over the classical k-NN technique by incorporating quantum computing (QC) techniques to enhance classification accuracy,…

Quantum Physics · Physics 2025-08-05 Asif Akhtab Ronggon , Md. Saifur Rahman

Data valuation is a growing research field that studies the influence of individual data points for machine learning (ML) models. Data Shapley, inspired by cooperative game theory and economics, is an effective method for data valuation.…

Machine Learning · Statistics 2023-11-28 Jiachen T. Wang , Ruoxi Jia

Large-scale approximate nearest neighbor search (ANN) has been gaining attention along with the latest machine learning researches employing ANNs. If the data is too large to fit in memory, it is necessary to search for the most similar…

Machine Learning · Computer Science 2025-01-29 Taiga Ikeda , Daisuke Miyashita , Jun Deguchi

Many new database application domains such as experimental sciences and medicine are characterized by large sequences as their main form of data. Using approximate representation can significantly reduce the required storage and search…

Databases · Computer Science 2019-04-22 Hagit Shatkay , Stanley B. Zdonik

This paper introduces the innovative Power Muirhead Mean K-Nearest Neighbors (PMM-KNN) algorithm, a novel data classification approach that combines the K-Nearest Neighbors method with the adaptive Power Muirhead Mean operator. The proposed…

Machine Learning · Computer Science 2024-05-28 Kourosh Shahnazari , Seyed Moein Ayyoubzadeh