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Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

Interpretability is a pressing issue for machine learning. Common approaches to interpretable machine learning constrain interactions between features of the input, rendering the effects of those features on a model's output comprehensible…

Machine Learning · Computer Science 2023-05-11 Kieran A. Murphy , Dani S. Bassett

We provide a complete and rigorous description of phase transitions for kinetic models of self-propelled particles interacting through alignment. These models exhibit a competition between alignment and noise. Both the alignment frequency…

Analysis of PDEs · Mathematics 2014-09-26 Pierre Degond , Amic Frouvelle , Jian-Guo Liu

Many modern datasets don't fit neatly into $n \times p$ matrices, but most techniques for measuring statistical stability expect rectangular data. We study methods for stability assessment on non-rectangular data, using statistical learning…

Computation · Statistics 2021-02-23 Kris Sankaran

Topological data analysis can extract effective information from higher-dimensional data. Its mathematical basis is persistent homology. The persistent homology can calculate topological features at different spatiotemporal scales of the…

Algebraic Topology · Mathematics 2023-09-29 Dinghua Shi , Zhifeng Chen , Chuang Ma , Guanrong Chen

A central challenge in neuroscience is understanding how neural system implements computation through its dynamics. We propose a nonlinear time series model aimed at characterizing interpretable dynamics from neural trajectories. Our model…

Quantitative Methods · Quantitative Biology 2016-10-28 Yuan Zhao , Il Memming Park

Qualitative methods such as the linear sampling method and the factorization method reconstruct acoustic scatterers through sampling indicators. In practice, these indicators are gray-scale fields on a prescribed sampling window and a…

Numerical Analysis · Mathematics 2026-05-21 Xiaomei Yang , Jiaying Jia , Zhiliang Deng

Sequence classification is the task of predicting a class label given a sequence of observations. In many applications such as healthcare monitoring or intrusion detection, early classification is crucial to prompt intervention. In this…

Machine Learning · Computer Science 2020-10-07 Maayan Shvo , Andrew C. Li , Rodrigo Toro Icarte , Sheila A. McIlraith

We show that the evolution of two-component particles governed by a two-dimensional spin-orbit lattice Hamiltonian can reveal transitions between topological phases. A kink in the mean width of the particle distribution signals the closing…

Quantum Gases · Physics 2017-11-16 Wei-Wei Zhang , Barry C. Sanders , Simon Apers , Sandeep K. Goyal , David L. Feder

Persistent homology is a multiscale method for analyzing the shape of sets and functions from point cloud data arising from an unknown distribution supported on those sets. When the size of the sample is large, direct computation of the…

Discovering governing equations of complex network dynamics is a fundamental challenge in contemporary science with rich data, which can uncover the mysterious patterns and mechanisms of the formation and evolution of complex phenomena in…

Artificial Intelligence · Computer Science 2024-11-12 Jiao Hu , Jiaxu Cui , Bo Yang

Recent studies have actively employed persistent homology (PH), a topological data analysis technique, to analyze the topological information in time series data. Many successful studies have utilized graph representations of time series…

Algebraic Topology · Mathematics 2025-12-15 Eunwoo Heo , Jae-Hun Jung

The crystallography of displacive phase transformations can be described with three types of matrices: the lattice distortion matrix, the orientation relationship matrix, and the correspondence matrix. The paper gives some formula to…

Materials Science · Physics 2021-01-12 Cyril Cayron

Temperature-induced phase transition in BaTiO3 has been explored using the machine learning analysis of domain morphologies visualized via variable-temperature scanning transmission electron microscopy (STEM) imaging data. This approach is…

Materials Science · Physics 2020-11-20 Mani Valleti , Reinis Ignatans , Sergei V. Kalinin , Vasiliki Tileli

Phase transitions are ubiquitous across life, yet hard to quantify and describe accurately. In this work, we develop an approach for characterizing generic attributes of phase transitions from very limited observations made deep within…

Statistical Mechanics · Physics 2023-08-30 Lukas Herron , Kinjal Mondal , John S. Schneekloth , Pratyush Tiwary

In persistent homology analysis, interval modules play a central role in describing the birth and death of topological features across a filtration. In this work, we extend this setting, and propose the use of bipath persistent homology,…

Algebraic Topology · Mathematics 2024-04-04 Toshitaka Aoki , Emerson G. Escolar , Shunsuke Tada

We introduce a class of $n$-dimensional (possibly inhomogeneous) spin-like lattice systems presenting modulated phases with possibly different textures. Such systems can be parameterized according to the number of ground states, and can be…

Statistical Mechanics · Physics 2021-06-11 Andrea Braides , Marco Cicalese

In principle, the probability of configurations, determined by the system's partition function or wave function, encapsulates essential information about phases and phase transitions. Despite the exponentially large configuration space, we…

Statistical Mechanics · Physics 2024-11-26 Wen-Yu Su , Yu-Jing Liu , Nvsen Ma , Chen Cheng

We propose a general technique for extracting a larger set of stable information from persistent homology computations than is currently done. The persistent homology algorithm is usually viewed as a procedure which starts with a filtered…

Computational Geometry · Computer Science 2021-01-29 Paul Bendich , Peter Bubenik , Alexander Wagner

Balancing performance and interpretability in multivariate time series classification is a significant challenge due to data complexity and high dimensionality. This paper introduces PHeatPruner, a method integrating persistent homology and…

Machine Learning · Computer Science 2025-04-28 Anh-Duy Pham , Olivier Basole Kashongwe , Martin Atzmueller , Tim Römer
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