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A phenomenological description for active bundles of polar filaments is presented. The activity of the bundle results from crosslinks, that induce relative displacements between the aligned filaments. Our generic description is based on…

Statistical Mechanics · Physics 2009-11-07 Karsten Kruse , Frank Julicher

The reproduction of a living cell requires a repeatable set of chemical events to be properly coordinated. Such events define a replication cycle, coupling the growth and shape change of the cell membrane with internal metabolic reactions.…

Cell Behavior · Quantitative Biology 2007-05-23 J. Macia , R. V. Sole

Filamentous cyanobacteria can show fascinating examples of nonequilibrium self-organization, which however are not well-understood from a physical perspective. We investigate the motility and collective organization of colonies of these…

Soft Condensed Matter · Physics 2023-10-20 Mixon K. Faluweki , Jan Cammann , Marco G. Mazza , Lucas Goehring

Self-assembly dynamics in binary surfactant mixtures and structure changes of lipid vesicles induced by detergent solution are studied using coarse-grained molecular simulations. Disk-shaped micelles, the bicelles, are stabilized by…

Soft Condensed Matter · Physics 2013-01-14 Hiroshi Noguchi

The distributions of many proteins in rod-shaped bacteria are far from homogenous. Often they accumulate at the cell poles or in the cell center. At the same time, the copy number of proteins in a single cell is relatively small making the…

Subcellular Processes · Quantitative Biology 2014-05-08 L. Wettmann , M. Bonny , K. Kruse

Circulating tumor cell clusters play an important role in the metastatic cascade. These clusters can acquire a migratory and more invasive phenotype, and coordinate their motion to migrate as a collective. Before such clusters can form by…

Biological Physics · Physics 2024-12-09 Quirine J. S. Braat , Cornelis Storm , Liesbeth M. C. Janssen

In biological systems, molecular-scale forces and motions are pivotal for enabling processes like motility, shape change, and replication. These forces and motions are organized, amplified, and transmitted across macroscopic scales by…

Hypothesis: Colloidal molecules with anisotropic shapes and interactions are powerful model systems for deciphering the behavior of real molecules and building units for creating materials with designed properties. While many strategies for…

Soft Condensed Matter · Physics 2022-07-19 Yogesh Shelke , Susana Marín-Aguilar , Fabrizio Camerin , Marjolein Dijkstra , Daniela J. Kraft

This paper presents an overview and discussion of magnetocapillary self-assemblies. New results are presented, in particular concerning the possible development of future applications. These self-organizing structures possess the notable…

Fluid Dynamics · Physics 2017-07-21 Galien Grosjean , Maxime Hubert , Nicolas Vandewalle

The temperature profiles of magnetically confined plasmas can display distinctive longlived pedestals at the edge and internally. Here we show that such structures can arise naturally through avalanching transport in a sandpile model. A…

Plasma Physics · Physics 2007-05-23 S. C. Chapman , R. O. Dendy , B. Hnat

We report Monte-Carlo simulation studies of some systems consisting of polar rod-like molecules interacting via a pair potential that exhibit liquid crystal phases, attributed with tilt angles of large magnitude. For theoretical…

Soft Condensed Matter · Physics 2012-04-11 Tushar Kanti Bose , Jayashree Saha

We develop a microscopic biophysical model for self-organization and reshaping of artificial tissue, that is co-driven by microscopic active forces between cells and extracellular matrix (ECM), and macroscopic forces that develop within the…

Biological Physics · Physics 2020-11-18 J. P. Hague , P. W. Mieczkowski , C. O'Rourke , A. J. Loughlin , J. B. Phillips

Chirality plays a crucial role in determining the structure of many systems in nature. Twisted or helical aggregates as a consequence of self-assembly can be seen in many biological and synthetic materials. Despite extensive theoretical and…

Soft Condensed Matter · Physics 2026-05-27 Sayantan Mondal , Jayashree Saha

Microtubules are biological protein polymers with critical and diverse functions. Their structures share some similarities with photosynthetic antenna complexes, particularly in the ordered arrangement of photoactive molecules with large…

Biological Physics · Physics 2019-02-20 G. L. Celardo , M. Angeli , P. Kurian , T. J. A. Craddock

Microtubules are hollow cylindrical polymers composed of the highly negatively-charged (~23e), high dipole moment (1750 D) protein a,b-tubulin. While the roles of microtubules in chromosomal segregation, macromolecular transport and cell…

Many cells contain non-centrosomal arrays of microtubules (MT), but the assembly, organisation and function of these arrays are poorly understood. We present the first theoretical model for the non-centrosomal MT cytoskeleton in…

Subcellular Processes · Quantitative Biology 2015-09-29 Philipp Khuc Trong , Hélène Doerflinger , Jörn Dunkel , Daniel St. Johnston , Raymond E. Goldstein

The availability of protein is an important factor for the determination of the size of the mitotic spindle. Involved in spindle-size regulation is kinesin-8, a molecular motor and microtubule (MT) depolymerase, which is known to tightly…

Biological Physics · Physics 2018-04-10 Matthias Rank , Aniruddha Mitra , Louis Reese , Stefan Diez , Erwin Frey

Adiabatic invariants foliate phase space, and impart a macro-scale hierarchy by separating microscopic variables. On a macroscopic leaf, long-scale ordered structures are created while maximizing entropy. A plasma confined in a…

Plasma Physics · Physics 2014-10-14 Z. Yoshida , S. M. Mahajan

Interconnected ensembles of biological entities are perhaps some of the most complex systems that modern science has encountered so far. In particular, scientists have concentrated on understanding how the complexity of the interacting…

Pattern Formation and Solitons · Physics 2020-11-18 Bram A. Siebert , Cameron L. Hall , James P. Gleeson , Malbor Asllani

Plant morphology emerges from cellular growth and structure. The turgor-driven diffuse growth of a cell can be highly anisotropic: significant longitudinally and negligible radially. Such anisotropy is ensured by cellulose microfibrils…

Quantitative Methods · Quantitative Biology 2022-08-23 Jeevanjyoti Chakraborty , Jingxi Luo , Rosemary J Dyson
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