Related papers: Modelling brain lesion volume in patches with CNN-…
Medical images such as 3D computerized tomography (CT) scans and pathology images, have hundreds of millions or billions of voxels/pixels. It is infeasible to train CNN models directly on such high resolution images, because neural…
Detection of cartilage loss is crucial for the diagnosis of osteo- and rheumatoid arthritis. A large number of automatic segmentation tools have been reported so far for cartilage assessment in magnetic resonance images of large joints. As…
Characterizing blood vessels in digital images is important for the diagnosis of many types of diseases as well as for assisting current researches regarding vascular systems. The automated analysis of blood vessels typically requires the…
This paper reports the methods and techniques we have developed for classify dermoscopic images (task 1) of the ISIC 2019 challenge dataset for skin lesion classification, our approach aims to use ensemble deep neural network with some…
Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images. We present a convolution neural network (CNN) based deep learning architecture for segmentation of objects in…
Because of their state-of-the-art performance in computer vision, CNNs are becoming increasingly popular in a variety of fields, including medicine. However, as neural networks are black box function approximators, it is difficult, if not…
Photoacoustic microscopy (PAM) has been a promising biomedical imaging technology in recent years. However, the point-by-point scanning mechanism results in low-speed imaging, which limits the application of PAM. Reducing sampling density…
We propose a new method, Patch-CNN, for diffusion tensor (DT) estimation from only six-direction diffusion weighted images (DWI). Deep learning-based methods have been recently proposed for dMRI parameter estimation, using either voxel-wise…
Bayesian networks are powerful statistical models to study the probabilistic relationships among set random variables with major applications in disease modeling and prediction. Here, we propose a continuous time Bayesian network with…
State-of-the-art convolutional neural network models for object detection and image classification are vulnerable to physically realizable adversarial perturbations, such as patch attacks. Existing defenses have focused, implicitly or…
Convolutional neural network (CNN) is widely used in computer vision applications. In the networks that deal with images, CNNs are the most time-consuming layer of the networks. Usually, the solution to address the computation cost is to…
Tumor segmentation in oncological PET is challenging, a major reason being the partial-volume effects that arise due to low system resolution and finite voxel size. The latter results in tissue-fraction effects, i.e. voxels contain a…
Segmentation of focal (localized) brain pathologies such as brain tumors and brain lesions caused by multiple sclerosis and ischemic strokes are necessary for medical diagnosis, surgical planning and disease development as well as other…
Deep learning brought boosts to auto diabetic retinopathy (DR) diagnosis, thus, greatly helping ophthalmologists for early disease detection, which contributes to preventing disease deterioration that may eventually lead to blindness. It…
Convolutional neural networks (CNN) have become a powerful tool for detecting patterns in image data. Recent papers report promising results in the domain of disease detection using brain MRI data. Despite the high accuracy obtained from…
Weakly supervised medical image segmentation (MIS) using generative models is crucial for clinical diagnosis. However, the accuracy of the segmentation results is often limited by insufficient supervision and the complex nature of medical…
Today, deep convolutional neural networks (CNNs) have demonstrated state of the art performance for supervised medical image segmentation, across various imaging modalities and tasks. Despite early success, segmentation networks may still…
Malignant pleural mesothelioma (MPM) is the most common form of mesothelioma. To assess response to treatment, tumor measurements are acquired and evaluated based on a patient's longitudinal computed tomography (CT) scans. Tumor volume,…
Extracting, harvesting and building large-scale annotated radiological image datasets is a greatly important yet challenging problem. It is also the bottleneck to designing more effective data-hungry computing paradigms (e.g., deep…
Noise injection is a fundamental tool for data augmentation, and yet there is no widely accepted procedure to incorporate it with learning frameworks. This study analyzes the effects of adding or applying different noise models of varying…