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Single-particle traces of the diffusive motion of molecules, cells, or animals are by-now routinely measured, similar to stochastic records of stock prices or weather data. Deciphering the stochastic mechanism behind the recorded dynamics…

Statistical Mechanics · Physics 2023-09-14 Henrik Seckler , Janusz Szwabinski , Ralf Metzler

Although visionary applications of molecular communication (MC), such as long-term continuous health monitoring by cooperative in-body nanomachines, have been proposed, MC is still in its infancy when it comes to practical implementation.…

Current SMILES-based diffusion models for molecule generation typically support only unimodal constraint. They inject conditioning signals at the start of the training process and require retraining a new model from scratch whenever the…

Machine Learning · Computer Science 2025-08-21 Yunzhe Zhang , Yifei Wang , Khanh Vinh Nguyen , Pengyu Hong

Transfer learning has recently become the dominant paradigm of machine learning. Pre-trained models fine-tuned for downstream tasks achieve better performance with fewer labelled examples. Nonetheless, it remains unclear how to develop…

Machine Learning · Computer Science 2024-01-30 Jonas Pfeiffer , Sebastian Ruder , Ivan Vulić , Edoardo Maria Ponti

Inter and intra-cellular signaling are essential for individual cells to execute various physiological tasks and accurately respond to changes in their environment. Signaling is carried out via diffusible molecules, the transport of which…

Soft Condensed Matter · Physics 2020-10-13 Sumantra Sarkar , Sandeep Choubey

This work studies optimal detection for communication over diffusion-based molecular timing (DBMT) channels. The transmitter simultaneously releases multiple information particles, where the information is encoded in the time of release.…

Information Theory · Computer Science 2017-09-12 Yonathan Murin , Nariman Farsad , Mainak Chowdhury , Andrea Goldsmith

By considering potential health problems that a fully covering receiver may cause in vessel-like environments, the implementation of a partially covering receiver is needed. To this end, distribution of hitting location of messenger…

Emerging Technologies · Computer Science 2018-02-06 Meriç Turan , Mehmet Sukru Kuran , H. Birkan Yilmaz , Ilker Demirkol , Tuna Tugcu

In this work, a directional modulation-based technique is devised to enhance the security of a multi-antenna wireless communication system employing M-PSK modulation to convey information. The directional modulation method operates by…

Information Theory · Computer Science 2016-04-15 Ashkan Kalantari , Mojtaba Soltanalian , Sina Maleki , Symeon Chatzinotas , Björn Ottersten

Machine learning approaches to Structure-Based Drug Design (SBDD) have proven quite fertile over the last few years. In particular, diffusion-based approaches to SBDD have shown great promise. We present a technique which expands on this…

Machine Learning · Computer Science 2024-07-01 Matan Halfon , Eyal Rozenberg , Ehud Rivlin , Daniel Freedman

Diffusion-based generative modeling has been achieving state-of-the-art results on various generation tasks. Most diffusion models, however, are limited to a single-generation modeling. Can we generalize diffusion models with the ability of…

Computer Vision and Pattern Recognition · Computer Science 2024-09-26 Changyou Chen , Han Ding , Bunyamin Sisman , Yi Xu , Ouye Xie , Benjamin Z. Yao , Son Dinh Tran , Belinda Zeng

In molecular communication (MC), combining different types of particles at the transmitter is a degree of freedom which can be utilized to improve performance. In this paper, we address the problem of pulse shaping to simplify time…

Emerging Technologies · Computer Science 2023-03-15 Wayan Wicke , Rebecca C. Felsheim , Lukas Brand , Vahid Jamali , Helene M. Loos , Andrea Buettner , Robert Schober

Due to the limited capabilities of a single bio-nanomachine, complicated tasks can be performed only with the co-operation of multiple bio-nanomachines. In this work, we consider a diffusion-based molecular communication system with a…

Information Theory · Computer Science 2020-05-20 Nithin V. Sabu , Abhishek K. Gupta

Diffusion Models are probabilistic models that create realistic samples by simulating the diffusion process, gradually adding and removing noise from data. These models have gained popularity in domains such as image processing, speech…

Computer Vision and Pattern Recognition · Computer Science 2024-08-21 Md Manjurul Ahsan , Shivakumar Raman , Yingtao Liu , Zahed Siddique

Diffusion models have demonstrated impressive capabilities in synthesizing diverse content. However, despite their high-quality outputs, these models often perpetuate social biases, including those related to gender and race. These biases…

Computer Vision and Pattern Recognition · Computer Science 2025-03-27 Yingdong Shi , Changming Li , Yifan Wang , Yongxiang Zhao , Anqi Pang , Sibei Yang , Jingyi Yu , Kan Ren

Mathematical modeling is now used commonly in the analysis of signaling networks. With advances in high resolution microscopy, the spatial location of different signaling molecules and the spatio-temporal dynamics of signaling microdomains…

Subcellular Processes · Quantitative Biology 2016-07-26 Jasmine Nirody , Padmini Rangamani

In biological cells and novel diagnostic devices biochemical receptors need to be sensitive to extremely small concentration changes of signaling molecules. The accuracy of such molecular signaling is ultimately limited by the counting…

Subcellular Processes · Quantitative Biology 2023-04-06 Aljaz Godec , Ralf Metzler

To understand sensory coding, we must ask not only how much information neurons encode, but also what that information is about. This requires decomposing mutual information into contributions from individual stimuli and stimulus features:…

Neurons and Cognition · Quantitative Biology 2025-10-23 Steeve Laquitaine , Simone Azeglio , Carlo Paris , Ulisse Ferrari , Matthew Chalk

We consider multi-user semantic communications over broadcast channels. While most existing works consider that each receiver requires either the same or independent semantic information, this paper explores the scenario where the semantic…

Information Theory · Computer Science 2024-06-13 Yufei Bo , Shuo Shao , Meixia tao

This paper presents a novel physics-based model for signal propagation in closed-loop molecular communication (MC) systems, which are particularly relevant for many envisioned biomedical applications, such as health monitoring or drug…

Systems and Control · Electrical Eng. & Systems 2025-06-23 Lukas Brand , Fardad Vakilipoor , Sören Botsch , Timo Jakumeit , Sebastian Lotter , Robert Schober , Maximilian Schäfer

This work localizes a molecular source in a diffusion based molecular communication (DbMC) system via a set of passive sensors and a fusion center. Molecular source localization finds its applications in future healthcare systems, including…

Signal Processing · Electrical Eng. & Systems 2019-07-10 Henry Ernest Baidoo-Williams , Muhammad Mahboob Ur Rahman , Qammer Hussain Abbasi
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