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We apply topological data analysis, specifically the Mapper algorithm, to the U.S. COVID-19 data. The resulting Mapper graphs provide visualizations of the pandemic that are more complete than those supplied by other, more standard methods.…

Populations and Evolution · Quantitative Biology 2021-09-15 Yiran Chen , Ismar Volic

After the breakout of the disease caused by the new virus COVID-19, the mitigation stage has been reached in most of the countries in the world. During this stage, a more accurate data analysis of the daily reported cases and other…

Populations and Evolution · Quantitative Biology 2020-07-01 S. Maltezos

Emerging in December 2019, the COVID-19 pandemic caused widespread health, economic, and social disruptions. Rapid global transmission overwhelmed healthcare systems, resulting in high infection rates, hospitalisations, and fatalities. To…

Populations and Evolution · Quantitative Biology 2025-10-08 Zacharias Komodromos , Kleanthis Malialis , Panayiotis Kolios

COVID-19 has resulted in a public health global crisis. The pandemic control necessitates epidemic models that capture the trends and impacts on infectious individuals. Many exciting models can implement this but they lack practical…

Computers and Society · Computer Science 2021-04-13 Ou Deng , Kiichi Tago , Qun Jin

Aim of this manuscript is to show a simple method to infer the time-course of new COVID-19 infections (the most important information in order to establish the effect of containment strategies) from available aggregated data, such as number…

Populations and Evolution · Quantitative Biology 2020-04-21 Andrea Pugliese , Sara Sottile

As Europe is facing the second wave of the CoViD-19 pandemic, each country should carefully review how it dealt with the first wave of outbreak. Lessons from the first experience should be useful to avoid indiscriminate closures and, above…

Populations and Evolution · Quantitative Biology 2021-02-10 Stefano De Leo , Manoel P. Araujo

This paper is concerned with the design of intermittent non-pharmaceutical strategies to mitigate the spread of the COVID-19 epidemic exploiting network epidemiological models. Specifically, by studying a variational equation for the…

Populations and Evolution · Quantitative Biology 2022-04-14 Marco Coraggio , Shihao Xie , Francesco De Lellis , Giovanni Russo , Mario di Bernardo

Nowadays, social media is the main tool in our new lives. The outbreak news and all related obtained from social media, and mob events affect the of spread these news fast. Recently, epidemiological models to study disease spread and…

Social and Information Networks · Computer Science 2025-04-22 Jumana H. S. Alkhalissi , Ahmed Al-Taweel

Mathematical modeling is one of the key factors of the effective control of newly found infectious diseases, such as COVID-19. Our knowledge about the parameters and the course of the infection is highly limited in the beginning of the…

Quantitative Methods · Quantitative Biology 2021-10-13 Péter Boldog , Norbert Bogya , Zsolt Vizi

There is increasing evidence that one of the most difficult problems in trying to control the ongoing COVID-19 epidemic is the presence of a large cohort of asymptomatic infectives. We develop a SIR-type model taking into account the…

Populations and Evolution · Quantitative Biology 2020-06-29 Giuseppe Gaeta

COVID-19 pandemic has been a disruptive event from health, social, and economic points of view. Besides that, changes in people's lifestyles, especially during the 2020 lockdowns, also affected energy networks. COVID-19 pandemic has…

When the COVID-19 pandemic first emerged in early 2020, healthcare and bureaucratic systems worldwide were caught off guard and largely unprepared to deal with the scale and severity of the outbreak. In Italy, this led to a severe…

Applications · Statistics 2023-07-24 Simone Milanesi , Giuseppe De Nicolao

The daily fluctuations in the released number of Covid-19 cases played a big role both at the beginning and in the most critical weeks of the outbreak, when local authorities in Italy had to decide whether to impose a lockdown and at which…

Methodology · Statistics 2020-06-24 Claudia Furlan , Cinzia Mortarino

Initially emerged in the Chinese city Wuhan and subsequently spread almost worldwide causing a pandemic, the SARS-CoV-2 virus follows reasonably well the SIR (Susceptible-Infectious-Recovered) epidemic model on contact networks in the…

Physics and Society · Physics 2020-10-28 Clara Pizzuti , Annalisa Socievole , Bastian Prasse , Piet Van Mieghem

Understanding disease spread through data visualisation has concentrated on trends and maps. Whilst these are helpful, they neglect important multi-dimensional interactions between characteristics of communities. Using the Topological Data…

Physics and Society · Physics 2020-04-21 Pawel Dlotko , Simon Rudkin

Phenomenological and deterministic models are often used for the estimation of transmission parameters in an epidemic and for the prediction of its growth trajectory. Such analyses are usually based on single peak outbreak dynamics. In…

Populations and Evolution · Quantitative Biology 2022-01-20 D. P. Mahapatra , S. Triambak

The outbreak of COVID-19 in 2020 has led to a surge in interest in the mathematical modeling of infectious diseases. Such models are usually defined as compartmental models, in which the population under study is divided into compartments…

Populations and Evolution · Quantitative Biology 2021-02-16 Malú Grave , Alex Viguerie , Gabriel F. Barros , Alessandro Reali , Alvaro L. G. A. Coutinho

This contribution analyzes the COVID-19 outbreak by comparably simple mathematical and numerical methods. The final goal is to predict the peak of the epidemic outbreak per country with a reliable technique. This is done by an algorithm…

Physics and Society · Physics 2020-05-15 Robert Schaback

The COVID-19 pandemic has brought forth the importance of epidemic forecasting for decision makers in multiple domains, ranging from public health to the economy as a whole. While forecasting epidemic progression is frequently…

Machine Learning · Computer Science 2022-07-21 Alexander Rodríguez , Harshavardhan Kamarthi , Pulak Agarwal , Javen Ho , Mira Patel , Suchet Sapre , B. Aditya Prakash

Motivated by the recent outbreak of coronavirus (COVID-19), we propose a stochastic model of epidemic temporal growth and mitigation based on a time-modulated Hawkes process. The model is sufficiently rich to incorporate specific…

Populations and Evolution · Quantitative Biology 2021-03-18 Michele Garetto , Emilio Leonardi , Giovanni Luca Torrisi
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