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The Poisson-Nernst-Planck (PNP) equations are one of the most effective model for describing electrostatic interactions and diffusion processes in ion solution systems, and have been widely used in the numerical simulations of biological…

Numerical Analysis · Mathematics 2023-12-19 Yang Liu , Shi Shu , Ying Yang

Depth First Search (DFS) tree is a fundamental data structure for solving graph problems. The DFS tree of a graph $G$ with $n$ vertices and $m$ edges can be built in $O(m+n)$ time. Till date, only a few algorithms have been designed for…

Data Structures and Algorithms · Computer Science 2017-05-09 Surender Baswana , Ayush Goel , Shahbaz Khan

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

Machine Learning · Computer Science 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Given $m \ge 2$ discrete probability distributions over $n$ states each, the minimum-entropy coupling is the minimum-entropy joint distribution whose marginals are the same as the input distributions. Computing the minimum-entropy coupling…

Information Theory · Computer Science 2025-09-30 Spencer Compton

A proportionally dense subgraph (PDS) of a graph is an induced subgraph of size at least two such that every vertex in the subgraph has proportionally as many neighbors inside as outside of the subgraph. Then, maxPDS is the problem of…

Computational Complexity · Computer Science 2024-06-03 Narmina Baghirova , Antoine Castillon

We show that the number of $k$-matching in a given undirected graph $G$ is equal to the number of perfect matching of the corresponding graph $G_k$ on an even number of vertices divided by a suitable factor. If $G$ is bipartite then one can…

Computational Complexity · Computer Science 2016-08-31 Shmuel Friedland , Daniel Levy

We consider the following geometric optimization problem: Given $ n $ axis-aligned rectangles in the plane, the goal is to find a set of horizontal segments of minimum total length such that each rectangle is stabbed. A segment stabs a…

Computational Geometry · Computer Science 2021-07-15 Friedrich Eisenbrand , Martina Gallato , Ola Svensson , Moritz Venzin

Graph coloring is arguably the most exhaustively studied problem in the area of approximate counting. It is conjectured that there is a fully polynomial-time (randomized) approximation scheme (FPTAS/FPRAS) for counting the number of proper…

Data Structures and Algorithms · Computer Science 2016-11-16 Pinyan Lu , Kuan Yang , Chihao Zhang , Minshen Zhu

A planar orthogonal drawing {\Gamma} of a connected planar graph G is a geometric representation of G such that the vertices are drawn as distinct points of the plane, the edges are drawn as chains of horizontal and vertical segments, and…

Computational Geometry · Computer Science 2025-02-06 Walter Didimo , Giuseppe Liotta , Giacomo Ortali , Maurizio Patrignani

We propose a polynomial-time algorithm which takes as input a finite set of points of $\mathbb R^3$ and compute, up to arbitrary precision, a maximum subset with diameter at most $1$. More precisely, we give the first randomized EPTAS and…

Computational Geometry · Computer Science 2018-04-12 Marthe Bonamy , Édouard Bonnet , Nicolas Bousquet , Pierre Charbit , Stéphan Thomassé

The problem of minimizing a polynomial over the standard simplex is one of the basic NP-hard nonlinear optimization problems --- it contains the maximum clique problem in graphs as a special case. It is known that the problem allows a…

Optimization and Control · Mathematics 2014-10-29 Etienne de Klerk , Monique Laurent , Zhao Sun

We consider the $k$-Median problem on planar graphs: given an edge-weighted planar graph $G$, a set of clients $C \subseteq V(G)$, a set of facilities $F \subseteq V(G)$, and an integer parameter $k$, the task is to find a set of at most…

Data Structures and Algorithms · Computer Science 2019-05-03 Vincent Cohen-Addad , Marcin Pilipczuk , Michał Pilipczuk

In this paper, we study the weighted stochastic matching problem. Let $G=(V, E)$ be a given edge-weighted graph and let its realization $\mathcal{G}$ be a random subgraph of $G$ that includes each edge $e\in E$ independently with a known…

Data Structures and Algorithms · Computer Science 2023-11-16 Mahsa Derakhshan , Mohammad Saneian

We provide an algorithm that maintains, against an adaptive adversary, a $(1-\varepsilon)$-approximate maximum matching in $n$-node $m$-edge general (not necessarily bipartite) undirected graph undergoing edge deletions with high…

Data Structures and Algorithms · Computer Science 2024-12-05 Jiale Chen , Aaron Sidford , Ta-Wei Tu

The approximate single-source shortest-path problem is as follows: given a graph with nonnegative edge weights and a designated source vertex $s$, return estimates of the distances from~$s$ to each other vertex such that the estimate falls…

Data Structures and Algorithms · Computer Science 2019-12-12 Nairen Cao , Jeremy T. Fineman , Katina Russell

We give the first polynomial-time approximation scheme (PTAS) for the stochastic load balancing problem when the job sizes follow Poisson distributions. This improves upon the 2-approximation algorithm due to Goel and Indyk (FOCS'99).…

Data Structures and Algorithms · Computer Science 2020-06-24 Anindya De , Sanjeev Khanna , Huan Li , Hesam Nikpey

For unweighted graphs, finding isometric embeddings is closely related to decompositions of $G$ into Cartesian products of smaller graphs. When $G$ is isomorphic to a Cartesian graph product, we call the factors of this product a…

Data Structures and Algorithms · Computer Science 2021-12-15 Kristin Sheridan , Joseph Berleant , Mark Bathe , Anne Condon , Virginia Vassilevska Williams

Cohen-Addad, Filtser, Klein and Le [FOCS'20] constructed a stochastic embedding of minor-free graphs of diameter $D$ into graphs of treewidth $O_{\epsilon}(\log n)$ with expected additive distortion $+\epsilon D$. Cohen-Addad et al. then…

Data Structures and Algorithms · Computer Science 2022-03-30 Arnold Filtser , Hung Le

The algorithm and complexity of approximating the permanent of a matrix is an extensively studied topic. Recently, its connection with quantum supremacy and more specifically BosonSampling draws special attention to the average-case…

Data Structures and Algorithms · Computer Science 2019-12-02 Zhengfeng Ji , Zhihan Jin , Pinyan Lu

We give a quasipolynomial time algorithm for the graph matching problem (also known as noisy or robust graph isomorphism) on correlated random graphs. Specifically, for every $\gamma>0$, we give a $n^{O(\log n)}$ time algorithm that given a…

Data Structures and Algorithms · Computer Science 2019-02-01 Boaz Barak , Chi-Ning Chou , Zhixian Lei , Tselil Schramm , Yueqi Sheng