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In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once.…

Data Structures and Algorithms · Computer Science 2009-06-26 Paolo Ferragina , Igor Nitto , Rossano Venturini

Let us consider the Multiple String Matching Problem. In this problem, we consider a long string, denoted by $t$, of length $n$. This string is referred to as a text. We also consider a sequence of $m$ strings, denoted by $S$, which we…

Quantum Physics · Physics 2024-11-25 Kamil Khadiev , Danil Serov

We consider the problem of maintaining a collection of strings while efficiently supporting splits and concatenations on them, as well as comparing two substrings, and computing the longest common prefix between two suffixes. This problem…

Data Structures and Algorithms · Computer Science 2024-08-15 Zsuzsanna Lipták , Francesco Masillo , Gonzalo Navarro

We give the first $\tilde{O}(\frac{1}{\sqrt{T}})$-error online algorithm for reconstructing noisy statistical databases, where $T$ is the number of (online) sample queries received. The algorithm, which requires only $O(\log T)$ memory,…

Databases · Computer Science 2015-04-07 Krzysztof Choromanski , Afshin Rostamizadeh , Umar Syed

Suppose we are asked to preprocess a string \(s [1..n]\) such that later, given a substring's endpoints, we can quickly count how many distinct characters it contains. In this paper we give a data structure for this problem that takes \(n…

Data Structures and Algorithms · Computer Science 2010-11-16 Travis Gagie , Juha Kärkkäinen

We give an $\mathcal{O}(n \log n)$-time, $\mathcal{O}(n)$-space algorithm for factoring a string into the minimum number of palindromic substrings. That is, given a string $S [1..n]$, in $\mathcal{O}(n \log n)$ time our algorithm returns…

Data Structures and Algorithms · Computer Science 2020-12-15 Gabriele Fici , Travis Gagie , Juha Kärkkäinen , Dominik Kempa

The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations…

Data Structures and Algorithms · Computer Science 2016-09-22 Djamal Belazzougui , Fabio Cunial , Juha Kärkkäinen , Veli Mäkinen

We introduce the first index that can be built in $o(n)$ time for a text of length $n$, and can also be queried in $o(q)$ time for a pattern of length $q$. On an alphabet of size $\sigma$, our index uses $O(n\sqrt{\log n\log\sigma})$ bits,…

Data Structures and Algorithms · Computer Science 2019-07-16 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

Grammar compression is a general compression framework in which a string $T$ of length $N$ is represented as a context-free grammar of size $n$ whose language contains only $T$. In this paper, we focus on studying the limitations of…

Data Structures and Algorithms · Computer Science 2024-09-24 Rajat De , Dominik Kempa

In this paper, a fully compressed pattern matching problem is studied. The compression is represented by straight-line programs (SLPs), i.e. a context-free grammars generating exactly one string; the term fully means that both the pattern…

Data Structures and Algorithms · Computer Science 2013-06-26 Artur Jeż

Palindromes are strings that read the same forward and backward. The computation of palindromic structures within strings is a fundamental problem in string algorithms, being motivated by potential applications in formal language theory and…

Data Structures and Algorithms · Computer Science 2026-05-15 Takuya Mieno , Tomohiro I

The most fundamental problem considered in algorithms for text processing is pattern matching: given a pattern $p$ of length $m$ and a text $t$ of length $n$, does $p$ occur in $t$? Multiple versions of this basic question have been…

Data Structures and Algorithms · Computer Science 2021-11-10 Moses Ganardi , Paweł Gawrychowski

Unlike in statistical compression, where Shannon's entropy is a definitive lower bound, no such clear measure exists for the compressibility of repetitive sequences. Since statistical entropy does not capture repetitiveness, ad-hoc measures…

Data Structures and Algorithms · Computer Science 2021-01-18 Tomasz Kociumaka , Gonzalo Navarro , Nicola Prezza

We study the following substring suffix selection problem: given a substring of a string T of length n, compute its k-th lexicographically smallest suffix. This a natural generalization of the well-known question of computing the maximal…

Data Structures and Algorithms · Computer Science 2013-09-24 Maxim Babenko , Paweł Gawrychowski , Tomasz Kociumaka , Tatiana Starikovskaya

The Shortest Superstring Problem (SSP) consists, for a set of strings S = {s_1,...,s_n}, to find a minimum length string that contains all s_i, 1 <= i <= k, as substrings. This problem is proved to be NP-Complete and APX-hard. Guaranteed…

Discrete Mathematics · Computer Science 2016-05-19 Tristan Braquelaire , Marie Gasparoux , Mathieu Raffinot , Raluca Uricaru

Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…

Data Structures and Algorithms · Computer Science 2013-05-09 Emanuele Giaquinta , Szymon Grabowski

Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the string matching problem is a task to find all occurrences of $P$ in $T$. In this study, we propose an algorithm that solves this problem in $O((n + m)q)$ time considering…

Data Structures and Algorithms · Computer Science 2020-04-14 Satoshi Kobayashi , Diptarama Hendrian , Ryo Yoshinaka , Ayumi Shinohara

It was recently proved that any SLP generating a given string $w$ can be transformed in linear time into an equivalent balanced SLP of the same asymptotic size. We show that this result also holds for RLSLPs, which are SLPs extended with…

Data Structures and Algorithms · Computer Science 2022-06-28 Gonzalo Navarro , Francisco Olivares , Cristian Urbina

Given a pattern string $P$ of length $n$ consisting of $\delta$ distinct characters and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet $\Sigma$ of size $\Delta$, the {\em exact string…

Data Structures and Algorithms · Computer Science 2015-12-14 Srikrishnan Divakaran

A simple linear-time algorithm for constructing a linear context-free tree grammar of size O(rg + r g log (n/r g))for a given input tree T of size n is presented, where g is the size of a minimal linear context-free tree grammar for T, and…

Data Structures and Algorithms · Computer Science 2018-10-09 Artur Jeż , Markus Lohrey