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We introduce a taxonomy of interaction types and show that graphs are focal hypergraphs: every graph is canonically a focal hypergraph via its closed neighbourhood structure, and every graph dynamical model is a special case of the general…

Physics and Society · Physics 2026-03-05 Elkaïoum M. Moutuou

Recent evidence indicates that the abundance of recurring elementary interaction patterns in complex networks, often called subgraphs or motifs, carry significant information about their function and overall organization. Yet, the…

Disordered Systems and Neural Networks · Physics 2009-11-10 A. Vazquez , R. Dobrin , D. Sergi , J. -P. Eckmann , Z. N. Oltvai , A. -L. Barabasi

In this paper, we study the graph classification problem from the graph homomorphism perspective. We consider the homomorphisms from $F$ to $G$, where $G$ is a graph of interest (e.g. molecules or social networks) and $F$ belongs to some…

Machine Learning · Computer Science 2020-07-03 Hoang NT , Takanori Maehara

We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

A power law degree distribution is established for a graph evolution model based on the graph class of k-trees. This k-tree-based graph process can be viewed as an idealized model that captures some characteristics of the preferential…

Discrete Mathematics · Computer Science 2008-11-27 Yong Gao

We study the design of graph filters to implement arbitrary linear transformations between graph signals. Graph filters can be represented by matrix polynomials of the graph-shift operator, which captures the structure of the graph and is…

Information Theory · Computer Science 2017-05-23 Santiago Segarra , Antonio G. Marques , Alejandro Ribeiro

Network theory has proven to be a powerful tool in describing and analyzing systems by modelling the relations between their constituent objects. In recent years great progress has been made by augmenting `traditional' network theory.…

Data Analysis, Statistics and Probability · Physics 2016-06-03 Dominik Traxl , Niklas Boers , Jürgen Kurths

We generalize ultraproducts and local-global limits of graphs to hypergraphs and other structures. We show that the local statistics of an ultraproduct of a sequence of hypergraphs are the ultralimits of the local statistics of the…

Combinatorics · Mathematics 2024-10-24 Riley Thornton

Graphs are ubiquitous in encoding relational information of real-world objects in many domains. Graph generation, whose purpose is to generate new graphs from a distribution similar to the observed graphs, has received increasing attention…

Machine Learning · Computer Science 2022-12-08 Yanqiao Zhu , Yuanqi Du , Yinkai Wang , Yichen Xu , Jieyu Zhang , Qiang Liu , Shu Wu

In this paper, we extend the sampling theory on graphs by constructing a framework that exploits the structure in product graphs for efficient sampling and recovery of bandlimited graph signals that lie on them. Product graphs are graphs…

Information Theory · Computer Science 2018-09-27 Rohan Varma , Jelena Kovačević

Given a hereditary graph property $\mathcal{P}$, consider distributions of random orderings of vertices of graphs $G\in\mathcal{P}$ that are preserved under isomorphisms and under taking induced subgraphs. We show that for many properties…

Probability · Mathematics 2015-06-11 Paul Balister , Béla Bollobás , Svante Janson

Graphs can have different properties that lead to several graph types and may allow for a varying representation of diverse information. In order to clarify the modeling power of graphs, we introduce a partial order on the most common graph…

Discrete Mathematics · Computer Science 2022-09-08 Josephine M. Thomas , Silvia Beddar-Wiesing , Alice Moallemy-Oureh , Rüdiger Nather

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

In the chip-firing variant, Diffusion, chips flow from places of high concentration to places of low concentration (or equivalently, from the rich to the poor). We explore this model on complete graphs, determining the number of different…

Combinatorics · Mathematics 2020-10-16 Todd Mullen , Richard Nowakowski , Danielle Cox

In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to…

Combinatorics · Mathematics 2018-01-04 Yangjing Long

The class of closed graphs by a linear ordering on their sets of vertices is investigated. A recent characterization of such a class of graphs is analyzed by using tools from the proper interval graph theory.

Combinatorics · Mathematics 2015-09-23 Marilena Crupi

In this paper we devise a generative random network model with core-periphery properties whose core nodes act as sublinear dominators, that is, if the network has $n$ nodes, the core has size $o(n)$ and dominates the entire network. We show…

Social and Information Networks · Computer Science 2021-07-28 Marios Papachristou

Many real world networks contain a statistically surprising number of certain subgraphs, called network motifs. In the prevalent approach to motif analysis, network motifs are detected by comparing subgraph frequencies in the original…

Social and Information Networks · Computer Science 2014-11-25 Anatol E. Wegner

We investigate flows on graphs whose links have random capacities. For binary trees we derive the probability distribution for the maximal flow from the root to a leaf, and show that for infinite trees it vanishes beyond a certain threshold…

Statistical Mechanics · Physics 2007-05-23 T. Antal , P. L. Krapivsky

The main contribution of this article is a new prior distribution over directed acyclic graphs, which gives larger weight to sparse graphs. This distribution is intended for structured Bayesian networks, where the structure is given by an…

Machine Learning · Statistics 2015-04-28 Felix L. Rios , John M. Noble , Timo J. T. Koski