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Mathematical models play an increasingly important role in the interpretation of biological experiments. Studies often present a model that generates the observations, connecting hypothesized process to an observed pattern. Such generative…

Populations and Evolution · Quantitative Biology 2014-06-18 Steven A. Frank

Mechanistic interpretability aims to break models into meaningful parts; verifying that two such parts implement the same computation is a prerequisite. Existing similarity measures evaluate either empirical behaviour, leaving them blind to…

Machine Learning · Computer Science 2026-05-15 ML Nissen Gonzalez , Melwina Albuquerque , Laurence Wroe , Jacob Meyer Cohen , Logan Riggs Smith , Thomas Dooms

Foundation models are subject to an ongoing heated debate, leaving open the question of progress towards AGI and dividing the community into two camps: the ones who see the arguably impressive results as evidence to the scaling hypothesis,…

Artificial Intelligence · Computer Science 2022-12-26 Moritz Willig , Matej Zečević , Devendra Singh Dhami , Kristian Kersting

Density functional theory is discussed in the context of one-particle systems. We show that the ground state density $\rho_0(x)$ and energy $E_0$ are simply related to a family of external potential energy functions with ground state wave…

Quantum Physics · Physics 2009-11-10 H. L. Neal

Nuclear density functional theory (DFT) is one of the main theoretical tools used to study the properties of heavy and superheavy elements, or to describe the structure of nuclei far from stability. While on-going efforts seek to better…

Nuclear Theory · Physics 2015-12-23 N. Schunck , J. D. McDonnell , D. Higdon , J. Sarich , S. M. Wild

The restoration of particle number within Energy Density Functional theory is analyzed. It is shown that the standard method based on configuration mixing leads to a functional of both the projected and non-projected densities. As an…

Nuclear Theory · Physics 2011-08-08 Guillaume Hupin , Denis Lacroix , Michael Bender

The study of theory combination in Satisfiability Modulo Theories (SMT) involves various model theoretic properties (e.g., stable infiniteness, smoothness, etc.). We show that such properties can be partly captured by the natural density of…

Logic in Computer Science · Computer Science 2025-05-23 Guilherme V. Toledo , Yoni Zohar

In the context of functional data analysis, probability density functions as non-negative functions are characterized by specific properties of scale invariance and relative scale which enable to represent them with the unit integral…

Numerical Analysis · Mathematics 2019-12-19 Jitka Machalova , Renata Talska , Karel Hron , Ales Gaba

The exact conditions for density functionals and density matrix functionals in terms of fractional charges and fractional spins are known, and their violation in commonly used functionals has been shown to be the root of many major failures…

Other Condensed Matter · Physics 2015-06-16 Weitao Yang , Paula Mori-Sanchez , Aron J. Cohen

We discuss several aspects of the dielectric response theory application to the density functional theory. This field has been an unceasing source of confusion during several decades. The most frequent reasons for this confusion are (a)…

Condensed Matter · Physics 2008-02-03 I. I. Mazin , R. E. Cohen

Kinetic energy functionals of the electronic density are used to model large systems in the context of density functional theory, without the need to obtain electronic wavefunctions. We discuss the problems associated with the application…

Condensed Matter · Physics 2009-11-07 Nicholas Choly , Efthimios Kaxiras

It is often not possible to construct a probability density function that describes the data. This can happen if there is no analytic description, and the number of parameters is too large so that it is impossible to simulate and tabulate…

Instrumentation and Methods for Astrophysics · Physics 2013-11-28 Dmitry Chirkin

I review a number of cognate issues that, taken together, pertain to the creation of a non-reductionistic theory of multiscale coordination and present one candidate theory based on the principle of dynamical similarity.

Neurons and Cognition · Quantitative Biology 2007-05-23 Abhijnan Rej

We consider interacting Fermi systems close to the unitary regime and compute the corrections to the energy density that are due to a large scattering length and a small effective range. Our approach exploits the universality of the density…

Nuclear Theory · Physics 2009-02-05 Anirban Bhattacharyya , T. Papenbrock

Previously, it has been shown that the direct correlation function for a Lennard-Jones fluid could be modeled by a sum of that for hard-spheres, a mean-field tail and a simple linear correction in the core region constructed so as to…

Statistical Mechanics · Physics 2008-08-20 James F. Lutsko

Experimental results often do not assess network structure; rather, the network structure is inferred by the dynamics of the nodes. From the dynamics of the nodes one then constructs a network of functional relations, termed the functional…

Adaptation and Self-Organizing Systems · Physics 2017-11-22 Jake Stroud , Mauricio Barahona , Tiago Pereira

By discussing several examples, the theory of generalized functional models is shown to be very natural for modeling some situations of reasoning under uncertainty. A generalized functional model is a pair (f, P) where f is a function…

Artificial Intelligence · Computer Science 2013-02-08 Paul-Andre Monney

Statistical modeling plays a fundamental role in understanding the underlying mechanism of massive data (statistical inference) and predicting the future (statistical prediction). Although all models are wrong, researchers try their best to…

Methodology · Statistics 2020-06-17 Hangjin Jiang

We performed a benchmark study on a series of dihydrogen bond complexes and constructed a set of reference bond distances and interaction energies. The test set was employed to assess the performance of several wave-function correlated and…

Chemical Physics · Physics 2015-01-22 E. Fabiano , L. A. Constantin , F. Della Sala

We analyze the structure of the Fundamental Measure Theory for the free energy density functional of hard sphere mixtures. A comparative study of the different versions of the theory, and other density functional approaches, is done in…

Soft Condensed Matter · Physics 2009-11-07 Jose A. Cuesta , Yuri Martinez-Raton , Pedro Tarazona