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Related papers: Inference under Superspreading: Determinants of SA…

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The drivers behind regional differences of SARS-CoV-2 spread on finer spatio-temporal scales are yet to be fully understood. Here we develop a data-driven modelling approach based on an age-structured compartmental model that compares 116…

Several important aspects related to SARS-CoV-2 transmission are not well known due to a lack of appropriate data. However, mathematical and computational tools can be used to extract part of this information from the available data, like…

Populations and Evolution · Quantitative Biology 2022-04-01 Nicolas Franco , Pietro Coletti , Lander Willem , Leonardo Angeli , Adrien Lajot , Steven Abrams , Philippe Beutels , Christel Faes , Niel Hens

This note considers the problem of conducting statistical inference on the share of individuals in some subgroup of a population that experience some event. The specific complication is that the size of the subgroup needs to be estimated,…

Applications · Statistics 2020-05-15 Christoph Rothe

Widespread opinions and discussion exist regarding the efficiency of social distancing after crucial spread of the SARS-CoV-2 virus during the actual Covid-19 pandemic. While Germany has released a federal law that prohibits any type of…

Populations and Evolution · Quantitative Biology 2020-03-26 Franz-Josef Schmitt

In February 2020 the first human infection with SARS-CoV-2 was reported in Germany. Since then the local public health offices have been responsible to monitor and react to the dynamics of the pandemic. One of their major tasks is to…

Applications · Statistics 2021-07-02 Sonja Jäckle , Elias Röger , Volker Dicken , Benjamin Geisler , Jakob Schumacher , Max Westphal

Background School closures and distance learning have been extensively applied to control SARS-CoV-2 transmission. Despite evidence of viral circulation in schools, the contribution of students and of in-person schooling to the transmission…

Background: There is uncertainty about the role of different age groups in propagating the SARS-CoV-2 epidemics in different countries. Methods: We used the Koch Institute data on COVID-19 cases in Germany. To minimize the effect of changes…

Populations and Evolution · Quantitative Biology 2020-04-07 Edward Goldstein

A second wave of SARS-CoV-2 is unfolding in dozens of countries. However, this second wave manifests itself strongly in new reported cases, but less in death counts compared to the first wave. Over the past three months in Germany, the…

Populations and Evolution · Quantitative Biology 2020-10-28 Matthias Linden , Jonas Dehning , Sebastian B. Mohr , Jan Mohring , Michael Meyer-Hermann , Iris Pigeot , Anita Schöbel , Viola Priesemann

Currently, due to the COVID-19 pandemic the public life in most European countries stopped almost completely due to measures against the spread of the virus. Efforts to limit the number of new infections are threatened by the advent of new…

Populations and Evolution · Quantitative Biology 2021-02-24 Thomas Götz , Wolfgang Bock , Robert Rockenfeller , Moritz Schäfer

A number of epidemics, including the SARS-CoV-1 epidemic of 2002-2004, have been known to exhibit superspreading, in which a small fraction of infected individuals is responsible for the majority of new infections. The existence of…

Populations and Evolution · Quantitative Biology 2021-03-31 Calvin Pozderac , Brian Skinner

Using recent data from voluntary mass testing, I provide credible bounds on prevalence of SARS-CoV-2 for Austrian counties in early December 2020. When estimating prevalence, a natural missing data problem arises: no test results are…

General Economics · Economics 2020-12-23 Gabriel Ziegler

Mechanistic models fit to streaming surveillance data are critical to understanding the transmission dynamics of an outbreak as it unfolds in real-time. However, transmission model parameter estimation can be imprecise, and sometimes even…

Understanding the impact of different social interactions is key to improving epidemic models. Here, we use extensive registry data -- including PCR test results and population-level networks -- to investigate the impact of school, family,…

Social and Information Networks · Computer Science 2025-01-08 Javier Garcia-Bernardo , Christine Hedde-von Westernhagen , Tom Emery , Albert Jan van Hoek

Although previous infection and vaccination provide protection against SARS-CoV-2 infection, both reinfection and breakthrough infection are possible events whose occurrence would increase with time after first exposure to the antigen and…

Populations and Evolution · Quantitative Biology 2022-06-07 Ariel Félix Gualtieri , Carolina de la Cal , Augusto Francisco Toma , Pedro Hecht

We estimate the reduction in transmission of SARS-CoV-2 achievable by surveillance testing of a susceptible population at different frequencies, comparing the cases of both the original Wuhan strain and the Delta variant. We estimate the…

Physics and Society · Physics 2021-10-04 Ahmed Elbanna , Nigel Goldenfeld

A primary quantity of interest in the study of infectious diseases is the average number of new infections that an infected person produces. This so-called reproduction number has significant implications for the disease progression. There…

A comprehensive retrospective analysis of public health interventions, such as large scale testing, quarantining, and contact tracing, can help identify mechanisms most effective in mitigating COVID-19. We investigate China based SARS-CoV-2…

Machine Learning · Computer Science 2025-12-30 Zhou Yang , Edward Dougherty , Chen Zhang , Zhenhe Pan , Fang Jin

Aims: Nonpharmaceutical interventions against the spread of SARS-CoV-2 in Germany included the cancellation of mass events (from March 8), closures of schools and child day care facilities (from March 16) as well as a "lockdown" (from March…

Populations and Evolution · Quantitative Biology 2020-08-27 Thomas Wieland

Despite the progress in medical data collection the actual burden of SARS-CoV-2 remains unknown due to under-ascertainment of cases. This was apparent in the acute phase of the pandemic and the use of reported deaths has been pointed out as…

Applications · Statistics 2023-07-13 Anastasia Chatzilena , Nikolaos Demiris , Konstantinos Kalogeropoulos

During its first two years, the SARS-CoV-2 pandemic manifested as multiple waves shaped by complex interactions between variants of concern, non-pharmaceutical interventions, and the immunological landscape of the population. Understanding…

Physics and Society · Physics 2022-12-29 Otilia Boldea , Amir Alipoor , Sen Pei , Jeffrey Shaman , Ganna Rozhnova
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